* add bioclip code_submission

* add ingestion program and bioclip model submission

* add model environment and change prediction.txt file

* remove defaults in ingestion.py

* Update baselines/BioCLIP_code_submission/metadata

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

* Update baselines/BioCLIP_code_submission/model.py

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

* Update baselines/BioCLIP_code_submission/model.py

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

* Update baselines/BioCLIP_code_submission/model.py

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

* Update baselines/BioCLIP_code_submission/model.py

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

* Update baselines/BioCLIP_code_submission/requirements.txt

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

* Update ingestion_program/ingestion.py

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

* Update baselines/BioCLIP_code_submission/model.py

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

* Apply suggestions from code review

deal with device variable

---------

Co-authored-by: Elizabeth Campolongo <38985481+egrace479@users.noreply.github.com>

* divide and rename scoring programs by task
make helper functions accessible to scoring programs

* Update metadata files to point at proper scoring function, input, and output

* Update mimic scoring program
get proper input files to read, not just directories
print all scores and output challenge scores to scores.json for CodaBench to read
Add requirements file for temporary fix

* Update species A scoring program
get proper input files to read, not just directories
print all scores and output challenge scores to scores.json for CodaBench to read
scores still need proper labels and requirements file is temporary fix pending base container

* Add 'ref' to solution filenames to match competition.yaml in formatting branch

…pecies

formatting