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ImmuneDynamics · Nov 12, 2023 · d0dd8d4 · d0dd8d4
1 parent 9005f05
commit d0dd8d4
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Showing 2 changed files with 4 additions and 6 deletions.
diff --git a/R/make.spatial.plot.R b/R/make.spatial.plot.R
@@ -102,17 +102,15 @@ make.spatial.plot <- function(dat, # spatial data object
       if(!is.element('ggthemes', installed.packages()[,1])) stop('ggthemes is required but not installed')
       if(!is.element('RColorBrewer', installed.packages()[,1])) stop('RColorBrewer is required but not installed')
       if(!is.element('raster', installed.packages()[,1])) stop('raster is required but not installed')
-      if(!is.element('rgeos', installed.packages()[,1])) stop('rgeos is required but not installed')
-
+
   ### Require packages
       require(ggplot2)
       require(scales)
       require(colorRamps)
       require(ggthemes)
       require(RColorBrewer)
       require(raster)
-      require(rgeos)
-
+
   ### Compatability conversions
 
       roi <- image.roi

diff --git a/workflows/Spatial - advanced/Spectre advanced spatial/Adv spatial 1 - add masks.R b/workflows/Spatial - advanced/Spectre advanced spatial/Adv spatial 1 - add masks.R
@@ -20,14 +20,14 @@
     ### Set InputDirectory (ROI TIFFs)
 
     setwd(PrimaryDirectory)
-    setwd("data/ROIs/")
+    setwd("../data/ROIs/")
     InputDirectory <- getwd()
     InputDirectory
 
     ### Set MaskDirectory (ROI mask TIFFs)
 
     setwd(PrimaryDirectory)
-    setwd("data/masks")
+    setwd("../data/masks")
     MaskDirectory <- getwd()
     MaskDirectory