redo docs

ImmuneDynamics · May 24, 2024 · da1c026 · da1c026
1 parent 91d79dc
commit da1c026
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Showing 8 changed files with 18 additions and 15 deletions.
diff --git a/.github/workflows/check-standard.yaml b/.github/workflows/check-standard.yaml
@@ -30,7 +30,7 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - uses: r-lib/actions/setup-pandoc@v2
+      # - uses: r-lib/actions/setup-pandoc@v2
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/R/BatchAdjust.R b/R/BatchAdjust.R
@@ -1,8 +1,7 @@
-#' BatchAdjust
-#' 
-#' Functions provided for BatchAdjust
-#' 
-#' @export
+# BatchAdjust
+# 
+# Functions provided for BatchAdjust
+# 
 
 ######## Version from https://github.com/i-cyto/CytofBatchAdjust/edit/master/BatchAdjust.R to allow on windows
 

diff --git a/R/do.add.cols.R b/R/do.add.cols.R
@@ -198,7 +198,6 @@ do.add.cols <- function(dat, # the list of dataframes (samples) where each dataf
 #'
 #' @references \url{https://sydneycytometry.org.au/spectre}.
 #'
-#' @examples
 #'
 #' @import data.table
 #'

diff --git a/R/do.zscore.R b/R/do.zscore.R
@@ -10,8 +10,7 @@
 #' @return Returns a new data.table with z-score calculations for each selected column
 #'
 #' @examples
-# res <- do.zscore(dat = Spectre::demo.sum,
-#                  use.cols = names(Spectre::demo.sum)[c(4:15)])
+#' res <- do.zscore(dat = Spectre::demo.sum, use.cols = names(Spectre::demo.sum)[c(4:15)])
 #' 
 #' @import data.table
 #'

diff --git a/R/read.spatial.files.R b/R/read.spatial.files.R
@@ -10,7 +10,6 @@
 #'
 #' @return Returns a list of spatial data objects.
 #'
-#' @examples
 #'
 #' @import data.table
 #'

diff --git a/man/do.add.cols.Rd b/man/do.add.cols.Rd
diff --git a/man/do.zscore.Rd b/man/do.zscore.Rd
diff --git a/man/run.pca.Rd b/man/run.pca.Rd
-Original file line number
+Diff line change
@@ Expand Up @@
     #'
     #' @references \url{https://sydneycytometry.org.au/spectre}.
     #'
-    #' @examples
     #'
     #' @import data.table
     #'
@@ Expand Down @@