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WIP: sort-dicom-series pipeline #1006

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WIP: sort-dicom-series pipeline #1006

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14055e6
feat(image-sets-normalization): add new pipeline
thewtex Nov 16, 2023
1545bd4
fix(image-sets-normalization): update codegened files for new pipeline
PaulHax Mar 13, 2024
75da4d8
feat(image-sets-normalization): Sort DICOMs
PaulHax Mar 18, 2024
6f98a52
feat(image-sets-normalization): read DICOM tags
PaulHax Mar 19, 2024
71ec4d5
fix(gdcmDiscriminateVolume): Remove prints
PaulHax Mar 22, 2024
0e5b203
chore(test_image_sets_normalization): fix one series test
PaulHax Mar 22, 2024
2553931
refactor(image-sets-normalization): rename output to image-sets
PaulHax Mar 26, 2024
eac5f09
refactor(image-sets-normalization): revamp data structures
PaulHax Mar 26, 2024
eada50c
fix(image-sets-normalization): fix sorting of files in series
PaulHax Mar 28, 2024
d4ec0c3
feat(image-sets-normalization): make tag keys english
PaulHax Mar 29, 2024
e68c930
fix(image-sets-normalization): check more tags when grouping volumes
PaulHax Mar 31, 2024
0ecd248
feat(image-sets-normalization): array and number types for tag values
PaulHax Apr 1, 2024
538c6a8
chore(dicom): add mr test for image sets normalization
PaulHax Apr 3, 2024
acbd2e4
WIP feat(image-sets-normalization): convert to UTF8 from character set
PaulHax Apr 3, 2024
3d112e7
WIP fix(image-sets-normalization): remove trailing space on tag values
PaulHax Apr 4, 2024
35db8a3
WIP fix(image-sets-normalization): fallback to tag hex key if private…
PaulHax Apr 4, 2024
7f491c0
WIP feat(image-sets-normalization): add group by options
PaulHax Apr 4, 2024
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2 changes: 1 addition & 1 deletion packages/compare-images/typescript/package.json
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Original file line number Diff line number Diff line change
Expand Up @@ -62,4 +62,4 @@
"type": "git",
"url": "https://github.com/InsightSoftwareConsortium/itk-wasm"
}
}
}
13 changes: 12 additions & 1 deletion packages/dicom/CMakeLists.txt
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Expand Up @@ -4,4 +4,15 @@ project(itkwasm-dicom)
set(CMAKE_CXX_STANDARD 17)

add_subdirectory(gdcm)
add_subdirectory(dcmtk)
add_subdirectory(dcmtk)

enable_testing()

add_test(NAME image-sets-normalization-help COMMAND image-sets-normalization --help)

add_test(NAME image-sets-normalization-smoke
COMMAND image-sets-normalization image-sets.json --files
${CMAKE_CURRENT_SOURCE_DIR}/test/data/input/DicomImageOrientationTest/ImageOrientation.1.dcm
${CMAKE_CURRENT_SOURCE_DIR}/test/data/input/DicomImageOrientationTest/ImageOrientation.2.dcm
${CMAKE_CURRENT_SOURCE_DIR}/test/data/input/DicomImageOrientationTest/ImageOrientation.3.dcm
)
3 changes: 3 additions & 0 deletions packages/dicom/gdcm/CMakeLists.txt
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Expand Up @@ -10,6 +10,9 @@ include(${ITK_USE_FILE})
add_executable(read-image-dicom-file-series read-image-dicom-file-series.cxx)
target_link_libraries(read-image-dicom-file-series PUBLIC ${ITK_LIBRARIES})

add_executable(image-sets-normalization image-sets-normalization.cxx)
target_link_libraries(image-sets-normalization PUBLIC ${ITK_LIBRARIES})

if (WASI)
return()
endif()
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