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Bugfix: files _nrrd and _dcm are ignored #3

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merged 1 commit into from
Jul 8, 2024
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Bugfix: files _nrrd and _dcm are ignored #3

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6 changes: 4 additions & 2 deletions dataset/pomc_dataset.py
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Original file line number Diff line number Diff line change
Expand Up @@ -82,7 +82,9 @@ def read_nrrd_data_from_files(files):

def get_dicom_data(self, folder):
result = np.array([])
file_list = glob.glob(os.path.join(folder, "*.dcm"))
# *dcm instead of *.dcm let us to read files like this
# 1-1_dcm and 1-2.dcm
file_list = glob.glob(os.path.join(folder, "*dcm"))
if len(file_list):
result, metadata = self.read_dicom_data_from_files(file_list)
if result.shape[0]:
Expand All @@ -100,7 +102,7 @@ def get_dicom_data(self, folder):

def get_nrrd_data(self, folder):
result = np.array([])
file_list = glob.glob(os.path.join(folder, "*.nrrd"))
file_list = glob.glob(os.path.join(folder, "*nrrd"))
if len(file_list):
result, metadata = self.read_nrrd_data_from_files(file_list)
if result.shape[0]:
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