Merge pull request #2 from JLSteenwyk/new_python_versions

New python versions

.github/workflows/ci.yml

@@ -5,7 +5,7 @@ jobs:
     runs-on: macos-latest
     strategy:
       matrix:
-        python-version: [3.6, 3.7, 3.8]
+        python-version: ['3.9', '3.10']
     steps:
     - uses: actions/checkout@master
     - name: Set up Python ${{ matrix.python-version }}
@@ -26,13 +26,13 @@ jobs:
   test-full:
     runs-on: macos-latest
     env:
-      PYTHON: '3.9'
+      PYTHON: '3.10'
     steps:
     - uses: actions/checkout@master
     - name: Setup Python
       uses: actions/setup-python@master
       with:
-        python-version: 3.9
+        python-version: '3.10'
     - name: Install dependencies
       run: |
         pip install -r ./tests/requirements.txt
@@ -87,4 +87,4 @@ jobs:
         with:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           BRANCH: gh-pages
-          FOLDER: docs/_build/html
+          FOLDER: docs/_build/html

Makefile

@@ -5,7 +5,7 @@ run.alignment_summary:
 ## Install, develop, and testing make commands
 install:
 	# install so biokit command is available in terminal
-	python setup.py install
+	python3 setup.py install
 
 develop:
 	# https://setuptools.readthedocs.io/en/latest/setuptools.html#development-mode

requirements.txt

@@ -1,2 +1,2 @@
-biopython==1.76
-numpy==1.18.2
+biopython==1.81
+numpy==1.24.0

setup.py

@@ -12,14 +12,12 @@
     "Operating System :: OS Independent",
     "Intended Audience :: Science/Research",
     "Programming Language :: Python",
-    "Programming Language :: Python :: 3.6",
-    "Programming Language :: Python :: 3.7",
-    "Programming Language :: Python :: 3.8",
     "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
     "Topic :: Scientific/Engineering",
 ]
 
-REQUIRES = ["biopython==1.76", "numpy==1.18.2", "cython"]
+REQUIRES = ["biopython==1.76", "numpy==1.24.0", "cython"]
 
 setup(
     name="jlsteenwyk-biokit",

tests/requirements.txt

@@ -1,4 +1,6 @@
-mock==2.0.0
-pytest-cov==2.5.1
-pytest-mock==1.10.1
-pytest==4.5.0
+mock==5.1.0
+pytest-cov==4.1.0
+pytest-mock==3.0.0
+pytest==7.4.2
+biopython==1.76
+numpy==1.24.0