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JLSteenwyk committed Sep 19, 2024
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5 changes: 3 additions & 2 deletions _sources/usage/index.rst.txt
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Expand Up @@ -679,11 +679,12 @@ with a semi-colon (;).

.. code-block:: shell
phykit bipartition_support_stats <tree> [-v/--verbose]
phykit bipartition_support_stats <tree> [-v/--verbose --cpu <cpu>]
Options: |br|
*<alignment>*: first argument after function name should be a tree file |br|
*-v/\\-\\-verbose*: optional argument to print all bipartition support values
*-v/\\-\\-verbose*: optional argument to print all bipartition support values |br|
*\\-\\-cpu*: CPUs to use to accelerate calculation

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5 changes: 3 additions & 2 deletions usage/index.html
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Expand Up @@ -698,12 +698,13 @@ <h3>Bipartition support statistics<a class="headerlink" href="#bipartition-suppo
In addition to support values for each node, the names of all terminal
branches tips are also included. Each terminal branch name is separated
with a semi-colon (;).</p>
<div class="highlight-shell notranslate"><div class="highlight"><pre><span></span>phykit<span class="w"> </span>bipartition_support_stats<span class="w"> </span>&lt;tree&gt;<span class="w"> </span><span class="o">[</span>-v/--verbose<span class="o">]</span>
<div class="highlight-shell notranslate"><div class="highlight"><pre><span></span>phykit<span class="w"> </span>bipartition_support_stats<span class="w"> </span>&lt;tree&gt;<span class="w"> </span><span class="o">[</span>-v/--verbose<span class="w"> </span>--cpu<span class="w"> </span>&lt;cpu&gt;<span class="o">]</span>
</pre></div>
</div>
<p>Options: <br/>
<em>&lt;alignment&gt;</em>: first argument after function name should be a tree file <br/>
<em>-v/\-\-verbose</em>: optional argument to print all bipartition support values</p>
<em>-v/\-\-verbose</em>: optional argument to print all bipartition support values <br/>
<em>\-\-cpu</em>: CPUs to use to accelerate calculation</p>
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