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Igraph #33

Merged
merged 9 commits into from
May 5, 2018
Merged

Igraph #33

merged 9 commits into from
May 5, 2018

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Jean-Baptiste-Camps
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@Jean-Baptiste-Camps Jean-Baptiste-Camps commented May 5, 2018 •
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  • Switched to igraph for stemma plotting ;
  • enhanced visualisations:
    • stemmata plotted as tree
    • dotted lines for uncertainty;
    • created special layout where height in the stemma is proportional to the number of variants from the model;
    • added color, titles, etc.
  • profiled the PCC.Stemma functions to gain efficiency (exec time /2);
  • simplified PCC.Stemma outputs and documented it;
  • added tests;
  • various corrections and improvements;

Partially resolves #31 .
Progress on #18 , #26

@Jean-Baptiste-Camps Jean-Baptiste-Camps merged commit 6f0da9a into addTests May 5, 2018
@Jean-Baptiste-Camps Jean-Baptiste-Camps deleted the igraph branch May 5, 2018 14:32
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