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Full protein tensorflow fit
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@Jhsmit Jhsmit released this 22 Jul 10:57
· 1899 commits to master since this release
v0.1.1
f20f543

The main new feature of this beta release is the change to fitting of the whole protein in one go rather than splitting it into sections and fitting one by one.

Advantages include:

  • Significant speed increase
  • Regularizer can propagate across gaps of no coverage
  • Regularizer now propagates across prolines

Changelog:

  • Default value for l1 regularizer is now 2000 because it was changed to average rather than sum
  • Default value of epochs from 10000 to 100000
  • Added method for getting intersections of KineticSeries
  • Added method to get k_int structured array, k_int for prolines and no coverage is now 0.
  • Updated internal intervals to [start, end) rather than [start, end]
  • Added TFCoverage object to allow fitting over the whole protein, to be merged in future releases
  • Added a 'uptake_corrected' field which is absolute D uptake but corrected by FD control
  • Added 'half life' initial guesses to GUI
  • Added full protein fit to GUI (replaced old fitting procedure)
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