Corrected license header to GNU GPL v3 (formerly, it was an MIT licen…

…se header);
JonasSchaub · Jul 3, 2023 · a839741 · a839741
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diff --git a/License-header.txt b/License-header.txt
@@ -1,24 +1,23 @@
 /*
- * GNU General Public License v3.0
+ * ART2a Clustering for Java
+ *
+ * Copyright (C) $today.year Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
  *
- * Copyright (c) $today.year Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
+ * Source code is available at <https://github.com/JonasSchaub/ART2a-Clustering-for-Java>
+ *
+ * GNU General Public License v3.0
  *
- * Permission is hereby granted, free of charge, to any person obtaining a copy
- * of this software and associated documentation files (the "Software"), to deal
- * in the Software without restriction, including without limitation the rights
- * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the Software is
- * furnished to do so, subject to the following conditions:
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
  *
- * The above copyright notice and this permission notice shall be included in all
- * copies or substantial portions of the Software.
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
  *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- * SOFTWARE.
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
  */
 
diff --git a/src/main/java/de/unijena/cheminf/clustering/art2a/Art2aClusteringTask.java b/src/main/java/de/unijena/cheminf/clustering/art2a/Art2aClusteringTask.java
@@ -1,25 +1,24 @@
 /*
- * GNU General Public License v3.0
+ * ART2a Clustering for Java
+ *
+ * Copyright (C) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
  *
- * Copyright (c) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
+ * Source code is available at <https://github.com/JonasSchaub/ART2a-Clustering-for-Java>
+ *
+ * GNU General Public License v3.0
  *
- * Permission is hereby granted, free of charge, to any person obtaining a copy
- * of this software and associated documentation files (the "Software"), to deal
- * in the Software without restriction, including without limitation the rights
- * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the Software is
- * furnished to do so, subject to the following conditions:
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
  *
- * The above copyright notice and this permission notice shall be included in all
- * copies or substantial portions of the Software.
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
  *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- * SOFTWARE.
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
  */
 
 package de.unijena.cheminf.clustering.art2a;

diff --git a/src/main/java/de/unijena/cheminf/clustering/art2a/abstractResult/Art2aAbstractResult.java b/src/main/java/de/unijena/cheminf/clustering/art2a/abstractResult/Art2aAbstractResult.java
@@ -1,25 +1,24 @@
 /*
- * GNU General Public License v3.0
+ * ART2a Clustering for Java
+ *
+ * Copyright (C) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
  *
- * Copyright (c) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
+ * Source code is available at <https://github.com/JonasSchaub/ART2a-Clustering-for-Java>
+ *
+ * GNU General Public License v3.0
  *
- * Permission is hereby granted, free of charge, to any person obtaining a copy
- * of this software and associated documentation files (the "Software"), to deal
- * in the Software without restriction, including without limitation the rights
- * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the Software is
- * furnished to do so, subject to the following conditions:
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
  *
- * The above copyright notice and this permission notice shall be included in all
- * copies or substantial portions of the Software.
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
  *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- * SOFTWARE.
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
  */
 
 package de.unijena.cheminf.clustering.art2a.abstractResult;

diff --git a/src/main/java/de/unijena/cheminf/clustering/art2a/clustering/Art2aDoubleClustering.java b/src/main/java/de/unijena/cheminf/clustering/art2a/clustering/Art2aDoubleClustering.java
@@ -1,25 +1,24 @@
 /*
- * GNU General Public License v3.0
+ * ART2a Clustering for Java
+ *
+ * Copyright (C) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
  *
- * Copyright (c) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
+ * Source code is available at <https://github.com/JonasSchaub/ART2a-Clustering-for-Java>
+ *
+ * GNU General Public License v3.0
  *
- * Permission is hereby granted, free of charge, to any person obtaining a copy
- * of this software and associated documentation files (the "Software"), to deal
- * in the Software without restriction, including without limitation the rights
- * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the Software is
- * furnished to do so, subject to the following conditions:
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
  *
- * The above copyright notice and this permission notice shall be included in all
- * copies or substantial portions of the Software.
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
  *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- * SOFTWARE.
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
  */
 
 package de.unijena.cheminf.clustering.art2a.clustering;

diff --git a/src/main/java/de/unijena/cheminf/clustering/art2a/clustering/Art2aFloatClustering.java b/src/main/java/de/unijena/cheminf/clustering/art2a/clustering/Art2aFloatClustering.java
@@ -1,25 +1,24 @@
 /*
- * GNU General Public License v3.0
+ * ART2a Clustering for Java
+ *
+ * Copyright (C) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
  *
- * Copyright (c) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
+ * Source code is available at <https://github.com/JonasSchaub/ART2a-Clustering-for-Java>
+ *
+ * GNU General Public License v3.0
  *
- * Permission is hereby granted, free of charge, to any person obtaining a copy
- * of this software and associated documentation files (the "Software"), to deal
- * in the Software without restriction, including without limitation the rights
- * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the Software is
- * furnished to do so, subject to the following conditions:
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
  *
- * The above copyright notice and this permission notice shall be included in all
- * copies or substantial portions of the Software.
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
  *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- * SOFTWARE.
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
  */
 
 package de.unijena.cheminf.clustering.art2a.clustering;

diff --git a/src/main/java/de/unijena/cheminf/clustering/art2a/exceptions/ConvergenceFailedException.java b/src/main/java/de/unijena/cheminf/clustering/art2a/exceptions/ConvergenceFailedException.java
@@ -1,25 +1,24 @@
 /*
- * GNU General Public License v3.0
+ * ART2a Clustering for Java
+ *
+ * Copyright (C) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
  *
- * Copyright (c) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
+ * Source code is available at <https://github.com/JonasSchaub/ART2a-Clustering-for-Java>
+ *
+ * GNU General Public License v3.0
  *
- * Permission is hereby granted, free of charge, to any person obtaining a copy
- * of this software and associated documentation files (the "Software"), to deal
- * in the Software without restriction, including without limitation the rights
- * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the Software is
- * furnished to do so, subject to the following conditions:
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
  *
- * The above copyright notice and this permission notice shall be included in all
- * copies or substantial portions of the Software.
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
  *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- * SOFTWARE.
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
  */
 
 package de.unijena.cheminf.clustering.art2a.exceptions;

diff --git a/src/main/java/de/unijena/cheminf/clustering/art2a/interfaces/IArt2aClustering.java b/src/main/java/de/unijena/cheminf/clustering/art2a/interfaces/IArt2aClustering.java
@@ -1,25 +1,24 @@
 /*
- * GNU General Public License v3.0
+ * ART2a Clustering for Java
+ *
+ * Copyright (C) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
  *
- * Copyright (c) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
+ * Source code is available at <https://github.com/JonasSchaub/ART2a-Clustering-for-Java>
+ *
+ * GNU General Public License v3.0
  *
- * Permission is hereby granted, free of charge, to any person obtaining a copy
- * of this software and associated documentation files (the "Software"), to deal
- * in the Software without restriction, including without limitation the rights
- * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the Software is
- * furnished to do so, subject to the following conditions:
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
  *
- * The above copyright notice and this permission notice shall be included in all
- * copies or substantial portions of the Software.
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
  *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- * SOFTWARE.
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
  */
 
 package de.unijena.cheminf.clustering.art2a.interfaces;

diff --git a/src/main/java/de/unijena/cheminf/clustering/art2a/interfaces/IArt2aClusteringResult.java b/src/main/java/de/unijena/cheminf/clustering/art2a/interfaces/IArt2aClusteringResult.java
@@ -1,25 +1,24 @@
 /*
- * GNU General Public License v3.0
+ * ART2a Clustering for Java
+ *
+ * Copyright (C) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
  *
- * Copyright (c) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
+ * Source code is available at <https://github.com/JonasSchaub/ART2a-Clustering-for-Java>
+ *
+ * GNU General Public License v3.0
  *
- * Permission is hereby granted, free of charge, to any person obtaining a copy
- * of this software and associated documentation files (the "Software"), to deal
- * in the Software without restriction, including without limitation the rights
- * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the Software is
- * furnished to do so, subject to the following conditions:
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
  *
- * The above copyright notice and this permission notice shall be included in all
- * copies or substantial portions of the Software.
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
  *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- * SOFTWARE.
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
  */
 
 package de.unijena.cheminf.clustering.art2a.interfaces;

diff --git a/src/main/java/de/unijena/cheminf/clustering/art2a/results/Art2aDoubleClusteringResult.java b/src/main/java/de/unijena/cheminf/clustering/art2a/results/Art2aDoubleClusteringResult.java
@@ -1,25 +1,24 @@
 /*
- * GNU General Public License v3.0
+ * ART2a Clustering for Java
+ *
+ * Copyright (C) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
  *
- * Copyright (c) 2023 Betuel Sevindik, Felix Baensch, Jonas Schaub, Christoph Steinbeck, and Achim Zielesny
+ * Source code is available at <https://github.com/JonasSchaub/ART2a-Clustering-for-Java>
+ *
+ * GNU General Public License v3.0
  *
- * Permission is hereby granted, free of charge, to any person obtaining a copy
- * of this software and associated documentation files (the "Software"), to deal
- * in the Software without restriction, including without limitation the rights
- * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- * copies of the Software, and to permit persons to whom the Software is
- * furnished to do so, subject to the following conditions:
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
  *
- * The above copyright notice and this permission notice shall be included in all
- * copies or substantial portions of the Software.
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
  *
- * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- * SOFTWARE.
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
  */
 
 package de.unijena.cheminf.clustering.art2a.results;