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v1.0.0

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@JosieHong JosieHong released this 19 Nov 17:08
· 8 commits to main since this release

Initial version of the codes includes:

  • Preprocessing data from various datasets: NIST, Agilent, GNPS, MoNA, and private data from Waters Q-TOF
  • Training FIDDLE
  • Running SIRIUS, BUDDY, and FIDDLE
  • Demo

Checkpoints include:

  • Orbitrap models:
    • fiddle_tcn_orbitrap.pt: formula prediction model on Orbitrap spectra
    • fiddle_fdr_orbitrap.pt: confidence score prediction model on Orbitrap spectra
  • Q-TOF models:
    • fiddle_tcn_qtof.pt: formula prediction model on Q-TOF spectra
    • fiddle_fdr_qtof.pt: confidence score prediction model on Q-TOF spectra