Source file not found in appbundle jobs

[jvaverka]

Description

I followed the instructions for submitting batch jobs via an appbundle. My main codefile includes a single julia file with function definitions and then executes function calls. The job fails when calling include because the julia file with function definitions cannot be found. Since the job was submitted as an appbundle, I am expecting the codefile to be able to include other source files within the appbundle directory.

To Reproduce

Clone the MWE repo and run submit.jl. The job will fail with the following message:

LoadError: SystemError: opening file "/opt/juliahub/common.jl": No such file or directory

Full job lob: Log for jr-awf3mbo64g.json

Environment

• Where: This happening in a JuliaHub IDE when submitting a JuliaHub batch job?
• JuliaHub.jl version: v0.1.4
• Relevant JuliaHub instance: juliahub.com
• Julia version: v1.9.2
• Operating system: Linux

[jvaverka]

I have also tested locally with the most recent version of JuliaHub.jl. Same source code and same error, but slightly different environment:

Environment

• Where: This is happening on my local machine
• JuliaHub.jl version: v0.1.5
• Relevant JuliaHub instance: <juliahub.com> v6.3.1
• Julia version: v1.9.3
• Operating system: Ubuntu 22.04.3 LTS

[mortenpi]

I'd say that this is working as expected. Conceptually, the appbundle gets unpacked as:

main.jl
appbundle/common.jl

so you need to do include("appbundle/common.jl") in the main.jl script. #53 will clarify the docs around this a bit.

Edit: actually, after discussing this with @pfitzseb, the include call (with a relative path) is currently somewhat undefined. So the plan is to make this work as expected, i.e. that you should be able to just include the code as you'd expect (i.e. the includes can stay relative to the script file you are submitting).