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KatrionaGoldmann · Jul 5, 2022 · c5e2905 · c5e2905
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Showing 19 changed files with 20 additions and 20 deletions.
diff --git a/R/add_animation.R b/R/add_animation.R
@@ -19,7 +19,7 @@
 #' z-axis
 #' @references
 #' Lewis, Myles J., et al. (2019).
-#' \href{https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1}{
+#' \href{https://pubmed.ncbi.nlm.nih.gov/31461658/}{
 #' Molecular portraits of early rheumatoid arthritis identify clinical and 
 #' treatment response phenotypes.}
 #' \emph{Cell reports}, \strong{28}:9

diff --git a/R/boxplot_trio.R b/R/boxplot_trio.R
@@ -48,7 +48,7 @@
 #' @keywords hplot
 #' @references
 #' Lewis, Myles J., et al. (2019).
-#' \href{https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1}{
+#' \href{https://pubmed.ncbi.nlm.nih.gov/31461658/}{
 #' Molecular portraits of early rheumatoid arthritis identify clinical and
 #' treatment response phenotypes.}
 #' \emph{Cell reports}, \strong{28}:9

diff --git a/R/example_data.R b/R/example_data.R
@@ -7,7 +7,7 @@
 #' \describe{
 #'   \item{Pathotype}{The synovial biopsy histological pathotype}
 #' }
-#' @source \url{https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1
+#' @source \url{https://pubmed.ncbi.nlm.nih.gov/31461658/
 #' }
 "syn_example_meta"
 
@@ -18,7 +18,7 @@
 #'
 #' @format A data frame with 500 rows representing the most significant 
 #' genes/probes and 81 columns representing samples. 
-#' @source \url{https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1
+#' @source \url{https://pubmed.ncbi.nlm.nih.gov/31461658/
 #' }
 "syn_example_rld"
 
diff --git a/R/polar_grid.R b/R/polar_grid.R
@@ -61,7 +61,7 @@ setClass("grid", slots = list(
 #' }
 #' @references
 #' Lewis, Myles J., et al. (2019).
-#' \href{https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1}{
+#' \href{https://pubmed.ncbi.nlm.nih.gov/31461658/}{
 #' Molecular portraits of early rheumatoid arthritis identify clinical and
 #' treatment response phenotypes.}
 #' \emph{Cell reports}, \strong{28}:9

diff --git a/R/radial_ggplot.R b/R/radial_ggplot.R
@@ -40,7 +40,7 @@
 #' @keywords hplot
 #' @references
 #' Lewis, Myles J., et al. (2019).
-#' \href{https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1}{
+#' \href{https://pubmed.ncbi.nlm.nih.gov/31461658/}{
 #' Molecular portraits of early rheumatoid arthritis identify clinical and
 #' treatment response phenotypes.}
 #' \emph{Cell reports}, \strong{28}:9

diff --git a/R/radial_plotly.R b/R/radial_plotly.R
@@ -39,7 +39,7 @@
 #' @importFrom methods is
 #' @references
 #' Lewis, Myles J., et al. (2019).
-#' \href{https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1}{
+#' \href{https://pubmed.ncbi.nlm.nih.gov/31461658/}{
 #' Molecular portraits of early rheumatoid arthritis identify clinical and
 #' treatment response phenotypes.}
 #' \emph{Cell reports}, \strong{28}:9

diff --git a/R/show_grid.R b/R/show_grid.R
@@ -10,7 +10,7 @@
 #' @importFrom plotly plot_ly add_trace add_text layout %>%
 #' @references
 #' Lewis, Myles J., et al. (2019).
-#' \href{https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1}{
+#' \href{https://pubmed.ncbi.nlm.nih.gov/31461658/}{
 #' Molecular portraits of early rheumatoid arthritis identify clinical and
 #' treatment response phenotypes.}
 #' \emph{Cell reports}, \strong{28}:9

diff --git a/R/significance_subset.R b/R/significance_subset.R
@@ -10,7 +10,7 @@
 #'   object.
 #' @references
 #' Lewis, Myles J., et al. (2019).
-#' \href{https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1}{
+#' \href{https://pubmed.ncbi.nlm.nih.gov/31461658/}{
 #' Molecular portraits of early rheumatoid arthritis identify clinical and
 #' treatment response phenotypes.}
 #' \emph{Cell reports}, \strong{28}:9

diff --git a/R/volcano3D.R b/R/volcano3D.R
@@ -49,7 +49,7 @@
 #' z-axis
 #' @references
 #' Lewis, Myles J., et al. (2019).
-#' \href{https://www.cell.com/cell-reports/fulltext/S2211-1247(19)31007-1}{
+#' \href{https://pubmed.ncbi.nlm.nih.gov/31461658/}{
 #' Molecular portraits of early rheumatoid arthritis identify clinical and 
 #' treatment response phenotypes.}
 #' \emph{Cell reports}, \strong{28}:9

diff --git a/man/add_animation.Rd b/man/add_animation.Rd
diff --git a/man/boxplot_trio.Rd b/man/boxplot_trio.Rd
diff --git a/man/polar_grid.Rd b/man/polar_grid.Rd
diff --git a/man/radial_ggplot.Rd b/man/radial_ggplot.Rd
diff --git a/man/radial_plotly.Rd b/man/radial_plotly.Rd
diff --git a/man/show_grid.Rd b/man/show_grid.Rd
diff --git a/man/significance_subset.Rd b/man/significance_subset.Rd
diff --git a/man/syn_example_meta.Rd b/man/syn_example_meta.Rd
diff --git a/man/syn_example_rld.Rd b/man/syn_example_rld.Rd
diff --git a/man/volcano3D.Rd b/man/volcano3D.Rd