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1. scaden scaden Public

   Deep Learning based cell composition analysis with Scaden.

   Python 75 26

2. mlf-core/sc-autoencoder mlf-core/sc-autoencoder Public

   An autoencoder for single cell data.

   Jupyter Notebook 2 1

3. tf-activity tf-activity Public

   Workflow to identify active transcription factors from CAGE-seq data.

   Nextflow 1 1

4. nf-core/cageseq nf-core/cageseq Public

   CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.

   Nextflow 11 12

5. hybrid-assembly hybrid-assembly Public

   Pipeline for hybrid assembly using short and long reads.

   Nextflow 7 5

6. nanoR nanoR Public

   R package for analysis of NanoString data

   R 2 3