DTI_PROCESSING

A general processing pipeline for diffusion data.

Please read the wiki pages for advice on how to get started.

Created by Kirstie Whitaker, on July 1st 2013. Contact: kw401@cam.ac.uk

Name		Name	Last commit message	Last commit date
Latest commit History 295 Commits
QUALITY_CONTROL		QUALITY_CONTROL
WIKI_RESOURCES		WIKI_RESOURCES
.gitignore		.gitignore
DTI_QualityAssurance_Report.py		DTI_QualityAssurance_Report.py
Extract_values.sh		Extract_values.sh
HarvardOxford_Parcellation.sh		HarvardOxford_Parcellation.sh
NetworkMeasuresDTI_loop.m		NetworkMeasuresDTI_loop.m
README.md		README.md
RandomiseDesignFileSetup.py		RandomiseDesignFileSetup.py
ReportRandomiseResults.sh		ReportRandomiseResults.sh
ReportingResultLocations.sh		ReportingResultLocations.sh
RunRandomiseTBSS.sh		RunRandomiseTBSS.sh
RunTopup.sh		RunTopup.sh
TBSS_SkelDataSetup.sh		TBSS_SkelDataSetup.sh
calculate_connectivity_matrix.py		calculate_connectivity_matrix.py
condition_seeds.py		condition_seeds.py
create_average_mat.py		create_average_mat.py
create_glm_files.py		create_glm_files.py
dti_preprocessing.sh		dti_preprocessing.sh
example_wrapper.sh		example_wrapper.sh
fdt_rotate_bvecs.sh		fdt_rotate_bvecs.sh
freesurfer_extract_rois.sh		freesurfer_extract_rois.sh
gmeasure.m		gmeasure.m
mprage_processing.sh		mprage_processing.sh
plot_connectivity_weights.py		plot_connectivity_weights.py
registrations.sh		registrations.sh
roistats.sh		roistats.sh
threshold_matrix.py		threshold_matrix.py

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