FIt-SNE-paper

• Fig. 1, Supp. Figs 2-3, 6: million_brain_cells/scanpy_preprocessing.py, million_brain_cells/load_and_save_pcs.R, and million_brain_cells/plot_embeddings_parameters.R
• Fig. 2, Supp. Fig 7-9 Shekhar/Shekhar_1d.R
• Timings: benchmarks/tsne_benchmarks.m
• Accuracy (Supp. Fig. 1): benchmarks/accuracy_benchmarks.m, accuracy_benchmarks.R
• Supp Fig 4: purified_pbmcs/purified_pbmcs.R
• Supp Fig 5: Hrvatin/hrvatin-tsne.R