Merge pull request AgriculturalSemantics#126 from KrishnaTO/git-updat…

…e-templates-yaml

Git-updates new yaml templates

.github/ISSUE_TEMPLATE/README.md

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+# Issues Templates
+
+## About
+
+In defining the potential templates for incoming issues, it must be accepted that the issuer is the target for these templates. This is to comply with the perspective approach to this repo, and allow individuals from non-technical experts (I) to [Ontology Developers](https://oboacademy.github.io/obook/getting_started/#ontology-engineerdeveloper-you-are) (IV) to create new issues with ease, as they are the roles dealing directly with terms and their contexts.
+
+---
+
+## Practice
+
+The perspective, in this repo, relies on each template's 'name' and 'about' content, while the possible 'title', 'tag', and 'assignees' are catered to the Ontology Curator's benefit.
+
+---
+
+## Topics
+
+The issues generally found are:
+
+Terms-oriented:
+
+- [Add-term](./add-term.md)
+- [Merge-term](./mergeTerm.md)
+- [Obsolete-Term](./obsolete-a-term.md)
+- [Split-term](./split-term.md)
+- [Add-synonym](./add-synonym.md)
+- [Fix-xref](./fix-xref.md)
+- [Relabel-term](./relabel-term.md)
+- [Revise-textual-definition](./revise-textual-definition.md)
+- [Typos-bugs-errors](./typos-bugs-errors.md)
+
+Semantics-oriented:
+
+- [Revise-logical-definition](./revise-logical-definition.md)
+  - Duplicate term in multiple ontologies
+  - Overclassified/Overgeneralized subdomain terms
+- [Revise-subclass-relationship](./revise-subclass-relationship.md)
+
+Others:
+
+- [Custom](./custom.md)
+  - IRI ID_range modifications
+  - Pattern-based subclasses workflow (dosdp/ROBOT)
+- [QC](./qc.md)
+  - Automated reports-based issues
+
+---
+
+## Issue forms upgrade
+
+Used github issue forms template for new issues.
+References:
+
+- [Github Community - Issue Template](https://gh-community.github.io/issue-template-feedback/structured/)
+- [Github Docs](https://docs.github.com/en/communities/using-templates-to-encourage-useful-issues-and-pull-requests/configuring-issue-templates-for-your-repository#creating-issue-templates)

.github/ISSUE_TEMPLATE/add-synonym-old.md

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+---
+name: Add synonym (old)
+about: New synonym suggestion for an existing AgrO term.
+title: '[Synonym] '
+labels: term-annot
+assignees: KrishnaTO
+# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE)
+
+---
+
+**AgrO term (ID and Label)**: 
+
+**Synonym to be added**: 
+
+**Synonym subtype**: 
+> ie, broad/exact/narrow/related
+
+**Database cross reference for the synonym**: 
+> Such as PURL, source (website) or a cross-reference to another ontology, like ENVO or PATO.
+
+**Your nano-attribution (ORCID)**: 
+> If you don't have an ORCID, you can sign up for one [here](https://orcid.org/)

.github/ISSUE_TEMPLATE/add-synonym.yml

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+name: Add synonym
+description: New synonym suggestion for an existing AgrO term.
+title: '[Synonym] '
+labels: [term-annot]
+assignees: KrishnaTO
+body:
+  - type: input
+    id: term
+    attributes:
+      label: AgrO term
+      description: ID and Label
+      placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)"
+    validations:
+      required: true
+
+  - type: textarea
+    id: add
+    attributes:
+      label: Synonym to be added
+      description: ie, broad/exact/narrow/related
+    validations:
+      required: true
+  - type: input
+    id: subtype
+    attributes:
+      label: Synonym subtype
+      description: ie, broad/exact/narrow/related
+    validations:
+      required: false
+
+  - type: textarea
+    id: ref
+    attributes:
+      label: Database cross reference for the synonym
+      description: Such as PURL, source (website) or a cross-reference to another ontology, like ENVO or PATO.
+    validations:
+      required: false
+  - type: input
+    id: attribution
+    attributes:
+      label: Your nano-attribution (ORCID)
+      description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/)
+    validations:
+      required: false

.github/ISSUE_TEMPLATE/add-term.yml

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+name: Add new term
+description: New term suggestion for AgrO
+title: "[NTR] "
+labels: [term-add]
+assignees: KrishnaTO
+# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE)
+body:
+  - type: input
+    id: term
+    attributes:
+      label: AgrO term
+      description: ID and Label
+      placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)"
+    validations:
+      required: true
+
+  - type: textarea
+    id: Synonyms
+    attributes:
+      label: Synonyms
+    validations:
+      required: false
+
+  - type: textarea
+    id: Definition
+    attributes:
+      label: Definition
+      description: please give PubMed ID, if applicable [PMID:#######]
+    validations:
+      required: true
+
+  - type: input
+    id: Parent
+    attributes:
+      label: Parent term
+      description: use [OLS](https://www.ebi.ac.uk/ols/ontologies/AgrO), or your favorite ontology browser
+    validations:
+      required: true
+
+  - type: textarea
+    id: Children
+    attributes:
+      label: Children terms
+      description: Should any existing terms that should be moved underneath this new proposed term?
+    validations:
+      required: false
+
+  - type: input
+    id: attribution
+    attributes:
+      label: Your nano-attribution (ORCID)
+      description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/)
+    validations:
+      required: false

.github/ISSUE_TEMPLATE/custom.yml

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+name: Custom issue template
+description: When the issue isn't defined by other templates. Please provide as many references to resources mentioned as timely available.
+assignees: krishnaTO
+# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE)

.github/ISSUE_TEMPLATE/fix-xref.yml

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+name: Fix/Add xref (source link, ex. for definitions)
+description: Report issue about incorrect xref source on term.
+title: '[xRef] '
+labels: [term-annot]
+assignees: KrishnaTO
+# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE)
+body:
+  - type: input
+    id: term
+    attributes:
+      label: AgrO term
+      description: ID and Label
+      placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)"
+    validations:
+      required: true
+
+  - type: textarea
+    id: Xref
+    attributes:
+      label: Xref that should be fixed
+      description: ID and label
+    validations:
+      required: false
+
+  - type: textarea
+    id: Comments
+    attributes:
+      label: Comments
+    validations:
+      required: false
+
+  - type: input
+    id: attribution
+    attributes:
+      label: Your nano-attribution (ORCID)
+      description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/)
+    validations:
+      required: false
+

.github/ISSUE_TEMPLATE/mergeTerm.yml

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+name: Merge two terms
+description: Merge with another AgrO term and obsolete/deprecate an existing AgrO term
+title: "[Merge] "
+labels: [term-mod]
+assignees: KrishnaTO
+# Template originally forked from [@mondo](https://github.com/monarch-initiative/mondo/tree/master/.github/ISSUE_TEMPLATE)
+body:
+  - type: input
+    id: term
+    attributes:
+      label: AgrO term
+      description: ID and Label
+      placeholder: "[liming process](http://purl.obolibrary.org/obo/AGRO_00000112)"
+    validations:
+      required: true
+
+  - type: textarea
+    id: Reason
+    attributes:
+      label: Reason for deprecation
+    validations:
+      required: true
+
+  - type: textarea
+    id: merge
+    attributes:
+      label: Term to be merged with
+    validations:
+      required: true
+
+  - type: input
+    id: attribution
+    attributes:
+      label: Your nano-attribution (ORCID)
+      description: If you don't have an ORCID, you can sign up for one [here](https://orcid.org/)
+    validations:
+      required: false
+
+