scbs 0.6.1 - improved output of scbs diff
This minor release addresses issues #15 and #16.
scbs diff
now reports a lot more information and summary statistics for each DMR, including the raw p-value, the mean methylation level in both cell groups, the number of CpG sites in the DMR, the number of cells that had sequencing coverage in each group, etc.
Both scbs diff
and scbs scan
now optionally write a header with the --write-header
flag.
Also scbs filter
no longer just throws away the log_info.txt
file and instead copies it to the filtered directory, as it should.