firecrown-ci #1298
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: firecrown-ci | |
| on: | |
| push: | |
| branches: | |
| - 'master' | |
| pull_request: | |
| branches: | |
| - '*' | |
| schedule: | |
| - cron: '47 1 * * *' | |
| jobs: | |
| firecrown-miniforge: | |
| name: Firecrown (${{ matrix.os }}, python-${{ matrix.python-version }}, Miniforge) | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| matrix: | |
| os: ["ubuntu", "macos"] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup miniforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: firecrown_developer | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Mambaforge | |
| show-channel-urls: true | |
| use-mamba: true | |
| - name: Cache date | |
| id: get-date | |
| run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Cache Conda env | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: miniforge-${{ runner.os }}--${{ runner.arch }}--python-${{ matrix.python-version }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| CACHE_NUMBER: 0 | |
| id: cache | |
| - name: Update environment | |
| run: | | |
| conda env update -q -v -n firecrown_developer -f environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Setting up Firecrown | |
| shell: bash -l {0} | |
| run: | | |
| export FIRECROWN_DIR=${PWD} | |
| conda env config vars set FIRECROWN_DIR=${FIRECROWN_DIR} | |
| conda activate firecrown_developer | |
| pip install --no-deps -e . | |
| - name: Setting up CosmoSIS | |
| shell: bash -l {0} | |
| run: | | |
| source ${CONDA_PREFIX}/bin/cosmosis-configure | |
| pushd ${CONDA_PREFIX} | |
| cosmosis-build-standard-library | |
| export CSL_DIR=${PWD}/cosmosis-standard-library | |
| conda env config vars set CSL_DIR=${CSL_DIR} | |
| conda activate firecrown_developer | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Setting up Cobaya | |
| shell: bash -l {0} | |
| run: python -m pip install cobaya | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Ensure clear Jupyter Notebooks | |
| uses: ResearchSoftwareActions/EnsureCleanNotebooksAction@1.1 | |
| - name: Running black check | |
| shell: bash -l {0} | |
| run: | | |
| black --check firecrown | |
| black --check tests | |
| black --check examples | |
| - name: Running flake8 | |
| shell: bash -l {0} | |
| run: | | |
| flake8 firecrown | |
| flake8 examples | |
| flake8 tests | |
| - name: Running mypy | |
| shell: bash -l {0} | |
| run: | | |
| mypy -p firecrown | |
| mypy -p examples | |
| mypy -p tests | |
| - name: Running pylint | |
| shell: bash -l {0} | |
| run: | | |
| pylint --rcfile tests/pylintrc tests | |
| pylint --rcfile firecrown/models/pylintrc firecrown/models | |
| pylint firecrown | |
| - name: Running pytest | |
| shell: bash -l {0} | |
| run: python -m pytest -vv | |
| - name: Running example - cosmosis - cosmic-shear | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/cosmicshear | |
| python generate_cosmicshear_data.py | |
| cosmosis cosmicshear.ini | |
| - name: Running example - cosmosis - des-y1-3x2pt | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| cosmosis des_y1_3x2pt.ini | |
| - name: Running example - cosmosis - des-y1-3x2pt-PT | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| cosmosis des_y1_3x2pt_PT.ini | |
| - name: Running example - cobaya - des-y1-3x2pt | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| cobaya-run cobaya_evaluate.yaml | |
| - name: Running example - cobaya - des-y1-3x2pt-PT | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| cobaya-run cobaya_evaluate_PT.yaml | |
| - name: Running example - NumCosmo - des-y1-3x2pt | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| python numcosmo_run.py | |
| - name: Running example - NumCosmo - des-y1-3x2pt-PT | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| python numcosmo_run_PT.py | |
| - name: Running example - cosmosis - srd_sn | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/srd_sn | |
| cosmosis sn_srd.ini | |
| - name: Running example - NumCosmo - srd_sn | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/srd_sn | |
| python numcosmo_run.py | |
| - name: Running example - cosmosis - cluster_number_counts | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/cluster_number_counts | |
| python generate_rich_mean_mass_sacc_data.py | |
| cosmosis cluster_counts_redshift_richness.ini | |
| cosmosis cluster_mean_mass_redshift_richness.ini | |
| cosmosis cluster_counts_mean_mass_redshift_richness.ini | |
| - name: Code coverage | |
| if: ${{ (matrix.os == 'ubuntu') && (matrix.python-version == '3.11') }} | |
| shell: bash -l {0} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| python -m pip install --no-input coveralls | |
| coverage run --source=firecrown -m pytest tests/ | |
| coveralls --service=github | |