Upgrade JAXB 2.3.3 -> 4.0.5

build.gradle

@@ -67,8 +67,8 @@ allprojects {
                 driver
                 utilities
             }
-    // exclude log4j, which may come in transitively, from all configurations to avoid its potential vulnerabilities
     configurations.configureEach {
+        // exclude log4j, which may come in transitively, from all configurations to avoid its potential vulnerabilities
         exclude group: "log4j", module:"log4j"
     }
     configurations.driver.setDescription("Dependencies used for SqlUtils")
@@ -320,9 +320,11 @@ allprojects {
                     // Force consistency for dependencies from pipeline and query
                     force "org.dom4j:dom4j:${dom4jVersion}"
                     // Force consistency across pipeline, SequenceAnalysis, and query
-                    force "javax.xml.bind:jaxb-api:${jaxbApiVersion}"
+                    force "javax.xml.bind:jaxb-api:2.3.1"
+                    force "jakarta.xml.bind:jakarta.xml.bind-api:${jaxbApiVersion}"
+                    force "org.glassfish.jaxb:jaxb-runtime:${jaxbVersion}"
 
-                    // Force consistency between pipeline's ActiveMQ  and cloud's jClouds dependencies
+                    // Force consistency between pipeline's ActiveMQ and cloud's jClouds dependencies
                     force "javax.annotation:javax.annotation-api:${javaxAnnotationVersion}"
 
                     // Force snappy-java version for CVE-2023-43642. Remove once HTSJDK bumps its preferred version.

gradle.properties

@@ -172,6 +172,8 @@ gsonVersion=2.8.9
 grpcVersion=1.62.2
 
 guavaVersion=33.1.0-jre
+
+# Note: You won't find usages in the product sources; this property is used by the gradle plugin.
 gwtVersion=2.11.0
 gwtServletJakartaVersion=2.11.0
 # For dev builds, the targeted, single permutation browser. Can be either gwt-user-firefox, gwt-user-chrome, or gwt-user-ie
@@ -202,9 +204,9 @@ javassistVersion=3.20.0-GA
 javaMailVersion=2.0.1
 javaxAnnotationVersion=1.3.2
 
-# No longer part of Java 10. Dependency for many modules.
-jaxbApiVersion=2.3.1
-jaxbVersion=2.3.3
+# Dependency for many modules.
+jaxbApiVersion=4.0.2
+jaxbVersion=4.0.4
 
 jaxrpcVersion=1.1