1.5.2

• Fixed: magset.sh path in "mag_improve" beta functionality

1.5.1

• Spades updated

1.5.0

• dbcan and COG annotations updated
• Roary replaced by Panaroo
• Small bug fixes

1.4.1

fixed: LOCUS tag with ":" not supported properly

1.3.1

• Small fixes in performance and logs
• License changed to GPL-3

1.3.0

• New COG database (updated with 2021 version)
• New default value for nucmer minimal identity property: 0.9 (this property is used to identify the GRIs)
• Dependencies from conda now are defined in environment.yml file
• Several small improvements and fixes

1.2.0

changed: bwa to bowtie2 very-sensitive

removed: intermediate files (.sam/.bam)
changed: minimal nucmer identity filter to 90%
bug fixed: duplicated regions identified as GRIs
small changes in alpha/beta functionality (mag_improve)

1.1.0

Small fixes and HTML results improved

1.0.0

Update README.md