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LichtargeLab

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  1. multimodal-network-diffusion multimodal-network-diffusion Public

    Repository for *Multimodal Network Diffusion Predicts Future Disease-Gene-Chemical Associations*

    HTML 9 3

  2. RNA_ET_ms RNA_ET_ms Public

    Code repository to accompany the manuscript *An Evolutionary Trace method defines functionally important bases and sites common to RNA families*

    MATLAB 2

  3. EAML EAML Public

    An EA-based pipeline for ranking disease risk genes through ensemble learning

    Python 2

  4. EPIMUTESTR EPIMUTESTR Public

    R 2

  5. BioVNN BioVNN Public

    Repository for *Using Interpretable Deep Learning to Model Cancer Dependencies*

    Python 1

  6. GeneEMBED GeneEMBED Public

    EA Wavelet analysis implementation

    Python

Repositories

Showing 10 of 13 repositories
  • EAML Public

    An EA-based pipeline for ranking disease risk genes through ensemble learning

    LichtargeLab/EAML’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Nov 1, 2023
  • Covariation-ET Public

    A repository for python implementations of EvolutionaryTrace for single positions and for pairs of positions (covariation).

    LichtargeLab/Covariation-ET’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 29, 2023
  • ShinyBioHEAT Public

    A shiny application that identifies the phenotype driving genes in evolved E. coli using Evolutionary Action.

    LichtargeLab/ShinyBioHEAT’s past year of commit activity
    R 0 0 0 0 Updated Aug 21, 2023
  • Raw_EA_bacteria Public

    Raw EA scores by species

    LichtargeLab/Raw_EA_bacteria’s past year of commit activity
    0 0 0 0 Updated Jun 19, 2023
  • LichtargeLab/EA_antibiotics_resistance’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 22, 2023
  • nDiffusion Public

    Network Diffusion (nDiffusion) to Validate Gene Connectedness

    LichtargeLab/nDiffusion’s past year of commit activity
    Python 0 0 0 4 Updated Dec 8, 2022
  • GeneEMBED Public

    EA Wavelet analysis implementation

    LichtargeLab/GeneEMBED’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 18, 2022
  • Covariation-ET_raw_data Public

    MSA and covariation results for CovET manuscript

    LichtargeLab/Covariation-ET_raw_data’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 10, 2022
  • LichtargeLab/Recurrent-High-Impact-Mutations-on-Class-A-GPCRs’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 2, 2021
  • LichtargeLab/EPIMUTESTR’s past year of commit activity
    R 2 MIT 0 0 0 Updated Sep 27, 2021

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