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Lieber Institute for Brain Development

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  1. spatialLIBD spatialLIBD Public

    Code for the spatialLIBD R/Bioconductor package and shiny app

    R 84 18

  2. HumanPilot HumanPilot Public

    Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

    HTML 71 29

  3. recount3 recount3 Public

    Explore and download data from the recount3 project

    R 31 4

  4. 10xPilot_snRNAseq-human 10xPilot_snRNAseq-human Public

    10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC

    HTML 21 9

  5. dotdotdot dotdotdot Public

    Example vignette for dotdotdot software

    MATLAB 18 11

  6. spatialDLPFC spatialDLPFC Public

    spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

    HTML 17 3

Repositories

Showing 10 of 119 repositories
  • spatial_hpc Public

    Repository for the spatial (U01) hippocampus (hipc) project

    LieberInstitute/spatial_hpc’s past year of commit activity
    HTML 1 0 1 0 Updated Nov 18, 2024
  • qsvaR Public

    Quality Surrogate Variable Analysis for Degradation Correction

    LieberInstitute/qsvaR’s past year of commit activity
    R 0 2 15 0 Updated Nov 17, 2024
  • visiumStitched Public

    R package containing functions useful for stitching Visium capture areas. Related to the example human brain data described at http://research.libd.org/visiumStitched_brain/.

    LieberInstitute/visiumStitched’s past year of commit activity
    R 1 0 2 0 Updated Nov 8, 2024
  • visiumStitched_brain Public

    Example human brain data used for https://research.libd.org/visiumStitched/.

    LieberInstitute/visiumStitched_brain’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 8, 2024
  • smoking-nicotine-mouse Public

    Smoking mouse project

    LieberInstitute/smoking-nicotine-mouse’s past year of commit activity
    R 1 0 1 0 Updated Nov 7, 2024
  • spatialLIBD Public

    Code for the spatialLIBD R/Bioconductor package and shiny app

    LieberInstitute/spatialLIBD’s past year of commit activity
    R 84 18 23 0 Updated Oct 31, 2024
  • DeconvoBuddies Public

    Helper Functions for LIBD Deconvolution

    LieberInstitute/DeconvoBuddies’s past year of commit activity
    R 3 1 6 0 Updated Oct 31, 2024
  • jhpce_module_source Public

    JHPCE module source files

    LieberInstitute/jhpce_module_source’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 29, 2024
  • jhpce_module_config Public

    JHPCE module configuration files

    LieberInstitute/jhpce_module_config’s past year of commit activity
    Lua 4 0 0 0 Updated Oct 29, 2024
  • BLA_crossSpecies Public

    Collaboration between Costa, Martinowich, and Hicks labs investigating basolateral amygdala cell-types across huamn and non-human primate species.

    LieberInstitute/BLA_crossSpecies’s past year of commit activity
    R 1 0 10 0 Updated Oct 23, 2024
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