Feature/pass reads #361
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Feature/pass reads #361
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* Made a proper SVG thought i'd just include it here * Remove setting the read_number on the result Add in the correct strand classifications for minknow 6 * Remove Read number from Result and all references to read number * Update target versions for MinKNOW to 6.0.0 - 6.0.0 Explicitly exit if running on MInKNOW 5.X.X * Update vendored read until API to v3.5.2 * Update test for conencted base caller version to work * Pin ont-pybasecall-client-lib at 7.4.12 * Add downgrade to 2024.2.0 to error message * Fix bug in reads not unblocking as expected #372 * change list() to [] * Chunk tracker uses read_id not read_number, update trackers internal variable names * bump version to 2024.3.0 * Fix tests for the new MinKNOW version compatibility Fix tests for the _statistics too not use `read_number` * Bump summarise version to 0.2.7 * Drop incorrect gotcha * Feature/deprecate guppy (#374) * This commit addresses the removal of guppy.py, partial removal of guppy tests, edits to documentation to largely replace guppy with dorado, removes the ont-pyguppy-client-lib and adds a warning to the readme. It also adds some extra classes to the read_until init in targets. * Remove builtin module for guppy * Update FAQ questions to focus dorado as well as Guppy * Change validate caller warning to mention dorado not guppy * Change readme warnings to Focus dorado and minknow breaking changes more Add link/requirement for dorado_basecall_server not guppy_basecall_server * Rename tests to dorado validation tests * Add dorado to mappy-test install target
alexomics
previously approved these changes
Aug 26, 2024
alexomics
approved these changes
Aug 26, 2024
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pass_readsfunction on the caller, rather than individual calls topass_read, should be faster and has removed sleeping.sub_tagand makes them comments.N.B Committed as @satriobio from the remote Vs code server, is this identity theft?