updated adk_transitions docs

MDAnalysis · Oct 5, 2018 · f620531 · f620531
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diff --git a/MDAnalysisData/descr/adk_transitions_FRODA.rst b/MDAnalysisData/descr/adk_transitions_FRODA.rst
@@ -13,7 +13,7 @@ Framework Rigidity Optimized Dynamics Algorithm (FRODA)
 [Farrell2010]_. Each ensemble of independently generated paths
 contains 200 trajectories in the CHARMM DCD format.
 
-This data set contains the *FRODA* ensemble.
+This data set contains the **FRODA** ensemble.
 
 FRODA AdK with geometric targeting on a rigid decomposition (FRODA
 server); closed (1AKE) to open (4AKE). Topology file: 1ake.pdb

diff --git a/docs/adk_transitions.rst b/docs/adk_transitions.rst
@@ -13,13 +13,24 @@ trajectories during which the close-to-open transiton of the enzyme
 adenylate kinase [Seyler2014]_ is sampled using different
 computational methods [Seyler2015]_.
 
+
 .. currentmodule:: MDAnalysisData.adk_transitions
 
 .. autosummary::
 
  fetch_adk_transitions_DIMS
  fetch_adk_transitions_FRODA 
 
+.. SeeAlso:: This set of trajectories was used in the `SPIDAL
+ Tutorial: MDAnalysis with Midas/radical.pilot`_ where the ensemble
+ of 400 DIMS+FRODA trajectories is analyzed with the *Path
+ Similarity Analysis* method [Seyler2015]_. Computations on such a
+ large(ish) dataset are sped up by parallelization at the task level
+ with `RADICAL-Pilot`_.
+
+.. _`SPIDAL Tutorial: MDAnalysis with Midas/radical.pilot`:
+ https://www.mdanalysis.org/SPIDAL-MDAnalysis-Midas-tutorial/
+.. _`RADICAL-Pilot`: https://radical-cybertools.github.io/