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Merge pull request #7 from MEDomics-UdeS/dev
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Minor update of data downloading instructions
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MahdiAll99 authored Apr 20, 2024
2 parents f0a3fb2 + e60e214 commit 1c6f9aa
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Expand Up @@ -3,18 +3,18 @@ Instructions

Download dataset
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In all tutorials, we use an open-access dataset containing medical images for various cancer types (Glioma, sarcoma...)
and different imaging modalities (MR, CT, and PET). The dataset has been pre-processed to adhere to package norms.
In all tutorials, we use open-access data of medical images of various cancer types (Glioma, sarcoma...)
and with different imaging modalities (MR, CT, and PET). All data has been pre-processed to adhere to package norms.

To download the dataset (~3.2 GB) and organize it in your local workspace, run the following command in your terminal from
the package parent folder ::
In order to run the tutorials, you must first download the dataset. We recommend downloading only a subset (~347 MB) instead of the
full dataset (~3.2 GB). To do so, run the following command in your terminal from the package parent folder: ::
python scripts/download_data.py --full-sts
python scripts/download_data.py --subset
.. note::
The dataset is large, and options are available to download only a subset. For more information, run:
python scripts/download_data.py --help
To download the full dataset, simply run the following command in your terminal from the package parent folder: ::

python scripts/download_data.py --full-sts

CSV file
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