duckdb demo build #44
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: duckdb demo build | |
| on: | |
| pull_request_review: | |
| types: [submitted] | |
| jobs: | |
| mimic-iv-duckdb: | |
| # only run if PR is approved | |
| if: github.event.review.state == 'approved' | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Download duckdb CLI | |
| run: | | |
| wget https://github.com/duckdb/duckdb/releases/download/v0.6.1/duckdb_cli-linux-amd64.zip | |
| unzip duckdb_cli-linux-amd64.zip | |
| echo "$HOME/.local/bin" >> $GITHUB_PATH | |
| mkdir -p "$HOME/.local/bin" | |
| mv duckdb "$HOME/.local/bin/duckdb" | |
| - name: Download demo data | |
| uses: ./.github/actions/download-demo | |
| - name: Load icu/hosp data into duckdb | |
| run: | | |
| echo "Running duckdb build." | |
| cd ${BUILDCODE_PATH} | |
| ./import_duckdb.sh ./ | |
| echo `md5sum mimic4.db` | |
| env: | |
| BUILDCODE_PATH: mimic-iv/buildmimic/duckdb |