Informatics Fellow for the RNA Bioscience Initiative at the University of Colorado Anschutz Medical Campus
• PhD in Cell, Stem Cell, and Developmental Biology
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University of Colorado Anschutz Medical Campus
- Aurora, Colorado
- https://orcid.org/0000-0003-2441-5836
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fastq-barcode-check
fastq-barcode-check PublicRust code to check FASTQ reads for the presence of barcode sequences.
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fuzzy-fastq
fuzzy-fastq PublicA bioinformatics script for matching DNA sequences with predefined barcodes and adapters using a mismatch threshold, then visualizing the distribution of matches in FASTQ files.
Python 1
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activitytesting-suite
activitytesting-suite PublicSeries of python programs for the analysis of rodent behavior.
Python
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tfbs_annotate
tfbs_annotate Publicscripts to annotate transcription factor binding site analysis from: http://cisbp.ccbr.utoronto.ca/TFTools.php and http://jaspar.genereg.net/
Python
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gene_annotate
gene_annotate PublicTool to annotate csv or tsv files containing a column of gene symbols. Outputs formal gene name and protein function/class to table.
Python
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