setup files

requirements.txt

@@ -0,0 +1,2 @@
+torch>=1.6
+numpy>=1.16.4

setup.cfg

@@ -0,0 +1,18 @@
+[flake8]
+# TODO: this should be 88 or 100 according PEP8
+max-line-length = 120
+exclude = .tox,*.egg,build,temp
+select = E,W,F
+doctests = True
+verbose = 2
+# https://pep8.readthedocs.io/en/latest/intro.html#error-codes
+format = pylint
+ignore = E731,W504,F401,F841,E722,W503
+
+[build_sphinx]
+source-dir = doc/source
+build-dir = doc/build
+all_files = 1
+
+[upload_sphinx]
+upload-dir = doc/build/html

setup.py

@@ -0,0 +1,87 @@
+# Copyright The GeoML Team
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+import os
+from io import open
+
+from setuptools import setup, find_packages, Command
+
+try:
+ import builtins
+except ImportError:
+ import __builtin__ as builtins
+
+PATH_ROOT = os.path.dirname(__file__)
+builtins.__STOCHMAN_SETUP__ = True
+
+import stochman
+
+
+class CleanCommand(Command):
+ """Custom clean command to tidy up the project root."""
+
+ user_options = []
+
+ def initialize_options(self):
+ pass
+
+ def finalize_options(self):
+ pass
+
+ def run(self):
+ os.system("rm -vrf ./build ./dist ./*.pyc ./*.tgz ./*.egg-info")
+
+
+PATH_ROOT = os.path.dirname(__file__)
+
+
+def load_requirements(path_dir=PATH_ROOT, comment_char="#"):
+ with open(os.path.join(path_dir, "requirements.txt"), "r") as file:
+ lines = [ln.strip() for ln in file.readlines()]
+ reqs = []
+ for ln in lines:
+ # filer all comments
+ if comment_char in ln:
+ ln = ln[: ln.index(comment_char)]
+ if ln: # if requirement is not empty
+ reqs.append(ln)
+ return reqs
+
+
+setup(
+ name="stochman",
+ version=stochman.__version__,
+ description=stochman.__docs__,
+ author=stochman.__author__,
+ author_email=stochman.__author_email__,
+ license=stochman.__license__,
+ packages=find_packages(),
+ python_requires=">=3.8",
+ install_requires=load_requirements(PATH_ROOT),
+ classifiers=[
+ "Environment :: Console",
+ "Natural Language :: English",
+ # How mature is this project? Common values are
+ # 3 - Alpha, 4 - Beta, 5 - Production/Stable
+ "Development Status :: 3 - Alpha",
+ # Indicate who your project is intended for
+ "Intended Audience :: Developers",
+ "Topic :: Scientific/Engineering :: Artificial Intelligence",
+ # Pick your license as you wish
+ "License :: OSI Approved :: Apache Software License",
+ "Operating System :: OS Independent",
+ # Specify the Python versions you support here. In particular, ensure
+ # that you indicate whether you support Python 2, Python 3 or both.
+ "Programming Language :: Python :: 3.8",
+ ],
+)

stochman/__init__.py

@@ -10,4 +10,26 @@
 # distributed under the License is distributed on an "AS IS" BASIS,
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
-# limitations under the License.
+# limitations under the License.
+"""Root package info."""
+
+import logging as python_logging
+import os
+import time
+
+_this_year = time.strftime("%Y")
+__version__ = "0.1"
+__author__ = "Nicki Skafte Detlefsen et al."
+__author_email__ = "nsde@dtu.dk"
+__license__ = "Apache-2.0"
+__copyright__ = f"Copyright (c) 2018-{_this_year}, {__author__}."
+__homepage__ = "https://github.com/CenterBioML/stochman"
+
+__docs__ = "StochMan is a collection of elementary algorithms for computations on random manifolds"
+
+_logger = python_logging.getLogger("stochman")
+_logger.addHandler(python_logging.StreamHandler())
+_logger.setLevel(python_logging.INFO)
+
+PACKAGE_ROOT = os.path.dirname(__file__)
+PROJECT_ROOT = os.path.dirname(PACKAGE_ROOT)

tests/__init__.py

@@ -10,4 +10,4 @@
 # distributed under the License is distributed on an "AS IS" BASIS,
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
-# limitations under the License.
+# limitations under the License.