v0.9.0

MRIReco v0.9.0

Diff since v0.8.1

Merged pull requests:

• CoilSensitivities.jl: Add realistic 2D coil profiles (#181) (@scholand)
• Add GPU support to MRIReco.jl (#182) (@nHackel)
• add the possibility to choose a specific echo and rep for espirit (#183) (@aTrotier)
• MRIFiles: Fixing save of ISMRMRDFile's in Julia 1.11 and 1.12 (#197) (@cncastillo)

Closed issues:

• BrukerSequence : Problem on 2D sequence with RawAcquisitionDataFid_360 (#180)
• A small misalignment with the ISMRMRD standard (#192)
• MRIFiles: save(ISMRMRDFile(rawfile), raw) broken in Julia 1.11 and 1.12 (#194)

v0.8.1

MRIReco v0.8.1

Diff since v0.8.0

Merged pull requests:

• Update RegLS interface (#161) (@nHackel)
• MRIFiles.jl: Additional <userParameters> tag is included within XML header of exported MRD (#166) (@cncastillo)
• Fix structural padding issue (#167) (@tknopp)
• Add option for vectors and tuples (#172) (@JakobAsslaender)

Closed issues:

• MRIFiles does not works for bruker datasets under PV360.X.X (#157)
• MRIReco v0.8 not working with Julia 1.6 LTS (#170)
• Registration of MRIFiles version 0.3.0 has failed (#173)

v0.8.0

MRIReco v0.8.0

Diff since v0.7.1

Merged pull requests:

• add other coil compressions (#131) (@aTrotier)
• Make minimal header of Raw consistent with Acq Data encoding size + type check for ISMRMRD encodedFOV (#134) (@alexjaffray)
• raw.encodedFOV in mm and acq.fov in meter (#137) (@aTrotier)
• Draft PR in order to use different number of profiles between contrast / repetition (#139) (@aTrotier)
• Add noise uncorrelation (data pre-whitening) before the reconstruction (#140) (@Laura2305)
• Noise decorrelation implementation for multiCoilMultiEcho reconstruction (#141) (@Laura2305)
• correct dimension input for non-square matrix (#144) (@aTrotier)
• Fix sensitivity op (#145) (@JakobAsslaender)
• Migrate from SnoopPrecompile to PrecompileTools (#147) (@timholy)
• Draft for discussion : Subspace implementation (#148) (@aTrotier)
• CompatHelper: bump compat for RegularizedLeastSquares to 0.10, (keep existing compat) (#151) (@github-actions[bot])
• Fix fieldmap nfft copy (#153) (@alexjaffray)
• Fix espirit for odd matrix sizes (#156) (@SebastianFlassbeck)
• Implement reconstruction for Bruker PV360 (#158) (@aTrotier)

Closed issues:

• Huge Package Split (#119)
• add Coil Compression methods (#122)
• voxel_size units in saveImage (#126)
• MRIFieldmaps.jl (working title) (#132)
• Different number of profiles between repetitions / contrasts (#138)
• AcquisitionData(kspace) is not working for rectangular kspace (#143)
• Conversion / reconstruction of multi-echo data converted from kspace to acquisitionData failed (#150)
• Copying (FieldmapNFFTOp) (#152)
• Implement tests for multiEcho reconstruction (#154)
• MRIHub : MRIReco.jl (#159)

v0.7.1

MRIReco v0.7.1

Diff since v0.7.0

Closed issues:

• Undersampled Cartesian Simulation (#127)

Merged pull requests:

• Add coil compression test (#125) (@aTrotier)
• update Mridataexample (#130) (@aTrotier)

v0.7.0

MRIReco v0.7.0

Diff since v0.6.0

Closed issues:

• Name of function "data" (#38)

Merged pull requests:

• create WaveletOp with type of acquisitionData (#120) (@aTrotier)
• AcqOffset in mm (coherent with acq.fov) (#121) (@aTrotier)

v0.6.0

MRIReco v0.6.0

Diff since v0.5.0

Closed issues:

• Offsets Bruker acquisition is not handle by the current reconstruction pipeline (#58)
• Strip of IO Part in Dedicated Package (#66)
• data from multiple dicom series into one (#85)
• Bruker pulse structure is not read correctly (#86)
• recoData(f::BrukerFile) only read Int16 format and procno 1 (#87)
• reading any bruker parameters takes 0.5 ms (#94)
• Complex Float32 data are not well handle (#103)
• KooshballTrajectory does not work for Float32 (#106)
• sdc on NFFTOp failed due to p.params.precompute = TENSOR (#107)
• Extremely slow multiCoil reconstruction for 32 coils (#108)
• Error when using CGNR (#110)

Merged pull requests:

• Reco Bruker 3DUTE initial implementation (#79) (@aTrotier)
• Change Function Scope and dims() -> ndims() (#80) (@alexjaffray)
• Multiple improvements for BrukerFile (#88) (@aTrotier)
• add offsets for bruker sequence (#90) (@aTrotier)
• issue with NFFTTools 0.2.4 -> force compat to 0.2.3 (#95) (@aTrotier)
• Read Bruker method file only the first time (#96) (@aTrotier)
• Ci use the subpackages version in the repository (#98) (@aTrotier)
• don't run setupIterativeReco when direct reco (#101) (@aTrotier)
• reco of repetitions along dims=6 (#105) (@aTrotier)
• WIP: espirit speedup (#111) (@tknopp)
• Update functions to handle 6-dims + add tests (#113) (@aTrotier)
• Add optional argument to ESPIRiT to output sensitivity maps of arbitrary size (#115) (@alexjaffray)
• OffsetBruker for 2D acquisition (#116) (@aTrotier)
• reshape hack so that ESPIRIT is compatible with the MKL backend of FFTW (#118) (@JakobAsslaender)

v0.5.0

MRIReco v0.5.0

Diff since v0.4.2

Closed issues:

• Bruker to acquisitionData : ComplexF32 -> ComplexF64 (#61)
• AcquisitionHeader Data Type Question (#68)

Merged pull requests:

• Any Complex types are supported (#67) (@aTrotier)
• Propagating arbitrary Type compatibility throughout codebase (#71) (@alexjaffray)
• WIP: Split MRIReco into three packages (#72) (@tknopp)

v0.4.2

MRIReco v0.4.2

Diff since v0.4.1

Closed issues:

• ISMRMRD Saving and Loading (#25)
• Replace Topelitz implementation (#45)
• ESPIRiT Segfault (#46)

Merged pull requests:

• Toeplitz >nfft.jl (#50) (@JakobAsslaender)
• Espirit to eign (#52) (@JakobAsslaender)
• Add support for multi-channel bruker acquisition (#54) (@aTrotier)
• CompatHelper: bump compat for HDF5 to 0.16, (keep existing compat) (#56) (@github-actions[bot])
• add test for Bruker multichannel acquisition (#57) (@aTrotier)

v0.4.1

MRIReco v0.4.1

Diff since v0.4.0

Merged pull requests:

• add NFFTNormalOp util functions (#44) (@JakobAsslaender)
• Linear operators2 (#47) (@tknopp)

v0.4.0

MRIReco v0.4.0

Diff since v0.3.5

Merged pull requests:

• CompatHelper: bump compat for "Reexport" to "1" (#24) (@github-actions[bot])
• CompatHelper: bump compat for NIfTI to 0.5, (keep existing compat) (#31) (@github-actions[bot])
• Nd espirit (#34) (@JakobAsslaender)
• CompatHelper: bump compat for RegularizedLeastSquares to 0.8, (keep existing compat) (#35) (@github-actions[bot])
• CompatHelper: add new compat entry for Polyester at version 0.6, (keep existing compat) (#36) (@github-actions[bot])