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@ManchesterBioinference

Manchester Bioinference Group

Statistical Inference Methods for Biological Data Analysis

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  1. Scasat Scasat Public

    Scasat is a single cell ATAC-seq preprocessing and analysis pipeline

    Jupyter Notebook 35 6

  2. BranchedGP BranchedGP Public

    Branching Gaussian process

    Jupyter Notebook 28 8

  3. IntegratingATAC-RNA-HiC IntegratingATAC-RNA-HiC Public

    scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper

    Jupyter Notebook 21 2

  4. GPcounts GPcounts Public

    Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods

    Jupyter Notebook 20 4

  5. GrandPrix GrandPrix Public

    GrandPrix

    Jupyter Notebook 16 4

  6. DEtime DEtime Public

    R package for two-sample time series analysis using Gaussian process methods

    HTML 9

Repositories

Showing 10 of 16 repositories
  • ManchesterBioinference/GP_Transcription_Dynamics’s past year of commit activity
    Python 1 1 0 0 Updated Sep 10, 2024
  • GPcounts Public

    Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods

    ManchesterBioinference/GPcounts’s past year of commit activity
    Jupyter Notebook 20 Apache-2.0 4 1 2 Updated Sep 4, 2024
  • CellPie Public
    ManchesterBioinference/CellPie’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Jul 18, 2024
  • burstInfer Public

    Using a dynamic memory-adjusted Hidden Markov Model to infer global and single-cell transcriptional parameters

    ManchesterBioinference/burstInfer’s past year of commit activity
    Python 5 Apache-2.0 1 2 0 Updated Mar 12, 2024
  • DEtime Public

    R package for two-sample time series analysis using Gaussian process methods

    ManchesterBioinference/DEtime’s past year of commit activity
    HTML 9 0 0 0 Updated Feb 1, 2024
  • ManchesterBioinference/ScaledPoisson’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 16, 2023
  • BranchedGP Public

    Branching Gaussian process

    ManchesterBioinference/BranchedGP’s past year of commit activity
    Jupyter Notebook 28 Apache-2.0 8 9 12 Updated May 14, 2023
  • IntegratingATAC-RNA-HiC Public

    scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper

    ManchesterBioinference/IntegratingATAC-RNA-HiC’s past year of commit activity
    Jupyter Notebook 21 2 0 0 Updated Nov 17, 2022
  • ManchesterBioinference/Systems-Immunology-Cytokine-Responses’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 9, 2022
  • GPosc Public
    ManchesterBioinference/GPosc’s past year of commit activity
    Jupyter Notebook 1 2 0 0 Updated May 25, 2022

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