Make gemBS.sh portable on different *nix systems

MarWoes · Jul 27, 2022 · b63eaba · b63eaba
1 parent aa73b0b
commit b63eaba
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/snakemake_wrapper/scripts/gemBS.sh b/snakemake_wrapper/scripts/gemBS.sh
@@ -1,10 +1,10 @@
-#!/usr/bin/bash
+#!/usr/bin/env bash
 cd $alignDir
 gemBS prepare -c gemBS.conf -t gemBS_cleaned.csv -o gemBS.json
 gemBS index
 gemBS map
-for file in *.bam; do 
-	mv "$file" "$(echo "$file" | sed s/bam/unmarked.bam/)"; 
+for file in *.bam; do
+	mv "$file" "$(echo "$file" | sed s/bam/unmarked.bam/)";
 done
 rm *.csi *.err *.md5
 exit