Fix tests

Merck · Sep 20, 2021 · 03bdece · 03bdece
1 parent 6b908e6
commit 03bdece
Show file tree

Hide file tree

Showing 2 changed files with 7 additions and 4 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -25,8 +25,8 @@ jobs:
         # $CONDA is an environment variable pointing to the root of the miniconda directory
         echo $CONDA/bin >> $GITHUB_PATH
     - name: Install dependencies
-      run: |
-        make env
+      run: make env
+    - name: Download deepbgc files
+      run: make download
     - name: Test with pytest
-      run: |
-        make test
+      run: make test
diff --git a/Makefile b/Makefile
@@ -7,6 +7,9 @@ env:
 	conda create -n $(ENV_NAME) -c bioconda python=3.7 hmmer prodigal
 	$(CONDA_ACTIVATE); pip install numpy; pip install . pytest pytest-mock hmmlearn
 
+download:
+	$(CONDA_ACTIVATE); deepbgc download
+
 bioconda-install:
 ifndef VERSION
 	$(error "Usage: make conda-env VERSION=0.1.9")