Merge pull request #69 from Merck/prihoda-patch-1

Require hmmlearn < 0.2.7
Merck · Feb 15, 2022 · 2dbbab3 · 2dbbab3
2 parents e91f56e + a79631c
commit 2dbbab3
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/Makefile b/Makefile
@@ -5,7 +5,7 @@ CONDA_ACTIVATE = eval "$$(conda shell.bash hook)" && conda activate $(ENV_NAME)
 
 env:
 	conda create -n $(ENV_NAME) -c bioconda python=3.7 hmmer prodigal
-	$(CONDA_ACTIVATE); pip install numpy; pip install . pytest pytest-mock hmmlearn
+	$(CONDA_ACTIVATE); pip install numpy; pip install . pytest pytest-mock .[hmm]
 
 download:
 	$(CONDA_ACTIVATE); deepbgc download

diff --git a/setup.py b/setup.py
@@ -43,7 +43,7 @@
     install_requires=install_requires,
     keywords='biosynthetic gene clusters, bgc detection, deep learning, pfam2vec',
     extras_require={
-        'hmm': ['hmmlearn>=0.2.1']
+        'hmm': ['hmmlearn>=0.2.1,<0.2.7']
     },
     classifiers=[
         'Development Status :: 4 - Beta',