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@nicolerg nicolerg released this 19 Jan 02:10
· 66 commits to main since this release
v1.5.0
7959e39
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Learn about vigilant mode.

Summary

  • Add load_feature_annotation(). MoTrPAC/MotrpacRatTraining6moData#43
  • Add tissues, assays, and cluster arguments to enrichment_network_vis() to
    provide an alternate way for users to specify results from MotrpacRatTraining6moData::GRAPH_PW_ENRICH.
  • Add tests for enrichment_network_vis(). #45
  • Use signif() instead of round() to display values in plot titles. #41
  • Add counts argument to transcript_normalize_counts() and atac_normalize_counts()
    to allow user-supplied data. #43
  • Add note about reproducibility issues to documentation for transcript_normalize_counts(). MoTrPAC/MotrpacRatTraining6moData#41
  • Move MotrpacRatTraining6moData from Imports to Depends. This means MotrpacRatTraining6moData is also attached (not just loaded) when MotrpacRatTraining6mo is attached. #40
  • Replace fetch_object(name_as_string) with get(name_as_string, envir=as.environment("package:MotrpacRatTraining6moData")). #40
  • Change URLs for load_methyl_feature_annotation() and load_atac_feature_annotation().
  • Fix bug in plot_feature_logfc() that prevented epigenetic features from being plotted.
  • Speed up plot_feature_logfc() for differential epigenetic features.
  • In get_rdata_from_url(), calculate log fold-change standard errors for METHYL
    differential analysis results: logFC_se = logFC/zscore MoTrPAC/MotrpacRatTraining6moData#44
  • Require newest version of MotrpacRatTraining6moData.

What's Changed

Full Changelog: v1.4.3...v1.5.0

Contributors

nicolerg
Assets 2
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