GitHub - ModelDBRepository/225086: Na+ Signals in olfactory bulb neurons (granule cell model) (Ona-Jodar et al. 2017)

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Na+ Signals in olfactory bulb neurons (granule cell model) (Ona-Jodar et al. 2017)

modeldb.science/225086

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
GC-gna.ipynb		GC-gna.ipynb
ipulse1.mod		ipulse1.mod
kfast.mod		kfast.mod
nadp.mod		nadp.mod
nat.mod		nat.mod
readme.html		readme.html
screenshot1.png		screenshot1.png
screenshot2.png		screenshot2.png
screenshot3.png		screenshot3.png

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<html><pre>
These model files are associated with the paper:

Two-Photon Na+ Imaging Reports Somatically Evoked Action Potentials in
Rat Olfactory Bulb Mitral and Granule Cell Neurites
Tiffany Ona-Jodar, Niklas J. Gerkau, S. Sara Aghvami, Christine
R. Rose, and Veronica Egger. Front. Cell. Neurosci. 11:50 2017
<a href="http://dx.doi.org/10.3389/fncel.2017.00050">http://dx.doi.org/10.3389/fncel.2017.00050</a>

These files were contributed by S. Sara Aghvami. (ipulse1.mod came
from the NEURON web site). These files require the NEURON simulator
which is freely available at <a href="http://www.neuron.yale.edu">www.neuron.yale.edu</a> and jupyter notebooks
which is freely available from <a href="http://jupyter.org">jupyter.org</a>

To run the simulation on a mac download and extract this archive.

Compile the mod files by cd'ing to the extracted folder and typing

nrnivmodl

Start the jupyter notebook by running the command:
jupyter notebook

Click on the GC-gna.ipynb file in your browser once the jpuyter
notebook has started.

You can select to run all cells from the menu items in the
browser. Close each figure to see the next one and this series of
figures will be generated:

<img src="./screenshot1.png" alt="screenshot 1" width="550">

The below corresponds to figure 4E in the paper:
<img src="./screenshot2.png" alt="screenshot 2" width="550">

<img src="./screenshot3.png" alt="screenshot 3" width="550">