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ModelSEED

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  1. ModelSEEDDatabase ModelSEEDDatabase Public

    This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

    HTML 58 40

  2. Model-SEED-core Model-SEED-core Public archive

    The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.

    Perl 19 11

  3. ModelSEEDpy ModelSEEDpy Public

    Python package for building and analyzing models using ModelSEED

    Python 19 17

  4. ModelSEED-UI ModelSEED-UI Public

    ModelSEED UI (beta)

    HTML 8 7

  5. PlantSEED PlantSEED Public

    Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment

    Perl 6 8

  6. ModelSeedApi ModelSeedApi Public

    Application Programming Interface to the Model Seed

    Perl 4 2

Repositories

Showing 10 of 46 repositories
  • ModelSEEDDatabase Public

    This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

    ModelSEED/ModelSEEDDatabase’s past year of commit activity
    HTML 58 40 23 2 Updated Dec 19, 2024
  • PlantSEED Public

    Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment

    ModelSEED/PlantSEED’s past year of commit activity
    Perl 6 8 13 0 Updated Dec 11, 2024
  • ModelSEED/MicrobiomeNotebooks’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 9, 2024
  • ModelSEEDpy Public

    Python package for building and analyzing models using ModelSEED

    ModelSEED/ModelSEEDpy’s past year of commit activity
    Python 19 MIT 17 6 4 Updated Nov 29, 2024
  • ModelSEED/KB-ModelSEEDReconstruction’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Nov 21, 2024
  • ModelSEED/KBaseNotebooks’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 5, 2024
  • editEscher Public

    A library for editing Escher Metabolic Network maps

    ModelSEED/editEscher’s past year of commit activity
    0 0 0 0 Updated Oct 25, 2024
  • ModelSEED/ModelSEED2Notebooks’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 8, 2024
  • AGORA2_genomes Public

    The genomes associated with the AGORA2 gut microbiome models

    ModelSEED/AGORA2_genomes’s past year of commit activity
    0 0 0 0 Updated Sep 11, 2024
  • MSGoogleColab Public
    ModelSEED/MSGoogleColab’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Sep 4, 2024

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