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MurrellGroup · Nov 14, 2024 · 67a850d · 67a850d
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diff --git a/.github/workflows/documentation.yml b/.github/workflows/documentation.yml
@@ -3,7 +3,7 @@ name: Documentation
 on:
   push:
     branches:
-      - master # update to match your development branch (master, main, dev, trunk, ...)
+      - main
     tags: '*'
   pull_request:
 

diff --git a/README.md b/README.md
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 # CHMMera.jl
 
+[![Documentation](https://img.shields.io/badge/docs-latest-blue.svg)](https://murrellgroup.github.io/CHMMera.jl/)
+[![MIT license](https://img.shields.io/badge/license-MIT-green.svg)](https://opensource.org/license/MIT)
 [![Coverage](https://codecov.io/gh/MurrellGroup/CHMMera.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/MurrellGroup/CHMMera.jl)
 
 CHMMera.jl is a method for reference-based detection of chimeric DNA sequences.

diff --git a/docs/src/index.md b/docs/src/index.md
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 # CHMMera.jl
 
+[![MIT license](https://img.shields.io/badge/license-MIT-green.svg)](https://opensource.org/license/MIT)
+[![Coverage](https://codecov.io/gh/MurrellGroup/CHMMera.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/MurrellGroup/CHMMera.jl)
+
 CHMMera.jl is a method for reference-based detection of chimeric DNA sequences.
 
 Chimera detection is performed using a Hidden Markov Model (HMM) that models sequences as being generated from a single reference with mutations or from multiple references with mutations. We implemented two approaches to determine mutation rates: