forked from matinnuhamunada/saccharopolyspora_manuscript
-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
58de61f
commit 0e54576
Showing
21 changed files
with
11,151 additions
and
11,115 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
468 changes: 234 additions & 234 deletions
468
assets/data/Figure_S11/msa/Staphylobactin/core_BGC_concat.fasta
Large diffs are not rendered by default.
Oops, something went wrong.
468 changes: 234 additions & 234 deletions
468
assets/data/Figure_S11/msa/Staphylobactin/core_BGC_concat_clean.fasta
Large diffs are not rendered by default.
Oops, something went wrong.
2 changes: 1 addition & 1 deletion
2
assets/data/Figure_S11/msa/Staphylobactin/core_BGC_concat_clean.fasta.bionj
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1 +1 @@ | ||
(((NZ_CP040605.1.region017:0.011151809,NZ_CP031142.1.region007:0.012888998):0.011426795,((NZ_CP061007.1.region003:0.00045580487,NZ_PJNB01000001.1.region028:-0.0001454719):0.00046192866,NZ_GL877881.1.region003:0.0036161868):0.032435406):0.084254071,NZ_JACHIW010000002.1.region002:0.15212503,(BGC0000943.region001:1.342497,(NZ_JAGPXE010000002.1.region001:0.089138456,NZ_FOZX01000003.1.region003:0.11087934):0.029545546):0.084960841); | ||
(((NZ_GL877881.1.region003:0.0036160131,(NZ_PJNB01000001.1.region028:-0.00014538996,NZ_CP061007.1.region003:0.00045572288):0.00046209292):0.032434799,(NZ_CP040605.1.region017:0.01115183,NZ_CP031142.1.region007:0.012888804):0.011426458):0.084249109,((NZ_FOZX01000003.1.region003:0.11087352,NZ_JAGPXE010000002.1.region001:0.089135125):0.029541016,BGC0000943.region001:1.3423543):0.084953099,NZ_JACHIW010000002.1.region002:0.15211514); |
Binary file modified
BIN
-125 Bytes
(84%)
assets/data/Figure_S11/msa/Staphylobactin/core_BGC_concat_clean.fasta.ckp.gz
Binary file not shown.
248 changes: 124 additions & 124 deletions
248
assets/data/Figure_S11/msa/Staphylobactin/core_BGC_concat_clean.fasta.iqtree
Large diffs are not rendered by default.
Oops, something went wrong.
508 changes: 255 additions & 253 deletions
508
assets/data/Figure_S11/msa/Staphylobactin/core_BGC_concat_clean.fasta.log
Large diffs are not rendered by default.
Oops, something went wrong.
18 changes: 9 additions & 9 deletions
18
assets/data/Figure_S11/msa/Staphylobactin/core_BGC_concat_clean.fasta.mldist
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,10 +1,10 @@ | ||
9 | ||
NZ_CP040605.1.region017 0.0000000 0.0566446 1.5228644 0.2617784 0.0562739 0.0240408 0.3329252 0.0595328 0.3508967 | ||
NZ_CP061007.1.region003 0.0566446 0.0000000 1.5283462 0.2642563 0.0003103 0.0566578 0.3294190 0.0043912 0.3520297 | ||
BGC0000943.region001 1.5228644 1.5283462 0.0000000 1.5545554 1.5266832 1.5238410 1.4623109 1.5265597 1.4817917 | ||
NZ_JACHIW010000002.1.region002 0.2617784 0.2642563 1.5545554 0.0000000 0.2636891 0.2676823 0.3782949 0.2680816 0.4050406 | ||
NZ_PJNB01000001.1.region028 0.0562739 0.0003103 1.5266832 0.2636891 0.0000000 0.0562889 0.3287891 0.0040754 0.3513775 | ||
NZ_CP031142.1.region007 0.0240408 0.0566578 1.5238410 0.2676823 0.0562889 0.0000000 0.3365761 0.0595316 0.3563127 | ||
NZ_JAGPXE010000002.1.region001 0.3329252 0.3294190 1.4623109 0.3782949 0.3287891 0.3365761 0.0000000 0.3328568 0.2000178 | ||
NZ_GL877881.1.region003 0.0595328 0.0043912 1.5265597 0.2680816 0.0040754 0.0595316 0.3328568 0.0000000 0.3559095 | ||
NZ_FOZX01000003.1.region003 0.3508967 0.3520297 1.4817917 0.4050406 0.3513775 0.3563127 0.2000178 0.3559095 0.0000000 | ||
NZ_GL877881.1.region003 0.0000000 0.3558851 1.5264044 0.0595317 0.0595305 0.3328346 0.0040754 0.2680660 0.0043912 | ||
NZ_FOZX01000003.1.region003 0.3558851 0.0000000 1.4816384 0.3508726 0.3562882 0.2000086 0.3513535 0.4050106 0.3520056 | ||
BGC0000943.region001 1.5264044 1.4816384 0.0000000 1.5227098 1.5236861 1.4621608 1.5265278 1.5543967 1.5281907 | ||
NZ_CP040605.1.region017 0.0595317 0.3508726 1.5227098 0.0000000 0.0240406 0.3329032 0.0562729 0.2617633 0.0566436 | ||
NZ_CP031142.1.region007 0.0595305 0.3562882 1.5236861 0.0240406 0.0000000 0.3365536 0.0562880 0.2676666 0.0566568 | ||
NZ_JAGPXE010000002.1.region001 0.3328346 0.2000086 1.4621608 0.3329032 0.3365536 0.0000000 0.3287675 0.3782684 0.3293973 | ||
NZ_PJNB01000001.1.region028 0.0040754 0.3513535 1.5265278 0.0562729 0.0562880 0.3287675 0.0000000 0.2636739 0.0003103 | ||
NZ_JACHIW010000002.1.region002 0.2680660 0.4050106 1.5543967 0.2617633 0.2676666 0.3782684 0.2636739 0.0000000 0.2642410 | ||
NZ_CP061007.1.region003 0.0043912 0.3520056 1.5281907 0.0566436 0.0566568 0.3293973 0.0003103 0.2642410 0.0000000 |
Binary file modified
BIN
+31 Bytes
(100%)
assets/data/Figure_S11/msa/Staphylobactin/core_BGC_concat_clean.fasta.model.gz
Binary file not shown.
2 changes: 1 addition & 1 deletion
2
assets/data/Figure_S11/msa/Staphylobactin/core_BGC_concat_clean.fasta.treefile
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1 +1 @@ | ||
(NZ_CP040605.1.region017:0.0121163241,(((NZ_CP061007.1.region003:0.0003150485,NZ_PJNB01000001.1.region028:0.0000009987):0.0003589735,NZ_GL877881.1.region003:0.0038639268):0.0269994528,((BGC0000943.region001:1.4417343098,(NZ_JAGPXE010000002.1.region001:0.0896078126,NZ_FOZX01000003.1.region003:0.1244890467):0.0786676160):0.0877577486,NZ_JACHIW010000002.1.region002:0.1671798207):0.0873810340):0.0206752592,NZ_CP031142.1.region007:0.0125783416); | ||
(NZ_GL877881.1.region003:0.0038639585,((((NZ_FOZX01000003.1.region003:0.1245024744,NZ_JAGPXE010000002.1.region001:0.0895905875):0.0786657393,BGC0000943.region001:1.4416864124):0.0877557590,NZ_JACHIW010000002.1.region002:0.1671757385):0.0873797253,(NZ_CP040605.1.region017:0.0121163206,NZ_CP031142.1.region007:0.0125784011):0.0206753313):0.0269992809,(NZ_PJNB01000001.1.region028:0.0000009987,NZ_CP061007.1.region003:0.0003150548):0.0003589589); |
Oops, something went wrong.