Skip to content
@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

Pinned Loading

  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 225 78

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 16

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    16 8

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 213 107

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 196 45

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 9

Repositories

Showing 10 of 288 repositories
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 4 AGPL-3.0 1 37 (1 issue needs help) 3 Updated Jul 11, 2024
  • homo-horreum Public
    NBISweden/homo-horreum’s past year of commit activity
    Python 0 GPL-3.0 1 4 5 Updated Jul 11, 2024
  • ega-public-metadata Public

    Python code for interacting with the EGA public metadata API

    NBISweden/ega-public-metadata’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 10, 2024
  • nf-core-aMeta Public

    An nf-core compliant version of aMeta; An ancient metagenomic profiling Snakemake workflow

    NBISweden/nf-core-aMeta’s past year of commit activity
    Nextflow 1 MIT 2 2 2 Updated Jul 10, 2024
  • raukr Public

    RaukR • R Beyond The Basics

    NBISweden/raukr’s past year of commit activity
    SCSS 0 GPL-3.0 0 0 0 Updated Jul 10, 2024
  • AGAT Public

    Another Gtf/Gff Analysis Toolkit

    NBISweden/AGAT’s past year of commit activity
    Perl 433 GPL-3.0 52 14 (3 issues need help) 0 Updated Jul 9, 2024
  • sda-services-backup Public
    NBISweden/sda-services-backup’s past year of commit activity
    Go 2 1 1 2 Updated Jul 8, 2024
  • swefreq Public

    Swedish Frequency resource for genomics website

    NBISweden/swefreq’s past year of commit activity
    Python 8 GPL-3.0 1 26 6 Updated Jul 5, 2024
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    NBISweden/data-submission-documentation’s past year of commit activity
    Shell 3 0 0 1 Updated Jul 5, 2024
  • urdr Public

    Timelogging system of NBIS

    NBISweden/urdr’s past year of commit activity
    TypeScript 0 AGPL-3.0 1 56 39 Updated Jul 5, 2024
View all repositories

Top languages

Loading…