Update 2024_08_EMBL_automated_batch_analysis_python.md #175
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| name: test-python-scripts | |
| on: | |
| push: | |
| branches: | |
| - gh-pages | |
| - master | |
| pull_request: [] | |
| jobs: | |
| test-python-scripts: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-latest, windows-latest, ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: install xvfb/deps | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -yy mesa-utils libgl1-mesa-dev xvfb curl | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: false | |
| auto-activate-base: true | |
| activate-environment: "" | |
| channel-priority: strict | |
| miniforge-version: latest | |
| - name: install common conda dependencies | |
| run: conda install -c conda-forge -c euro-bioimaging python=3.10 napari=0.4.17 pytest notebook matplotlib jupytext "scikit-image>=0.20" openijtiff -y | |
| - name: linux test | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash -l {0} | |
| run: xvfb-run --server-args="-screen 0 1024x768x24" pytest -v test_python | |
| - name: osx test | |
| if: matrix.os == 'macos-latest' | |
| shell: bash -l {0} | |
| run: pytest -v test_python | |
| - name: windows test | |
| if: matrix.os == 'windows-latest' | |
| shell: cmd /C CALL {0} | |
| run: pytest -v test_python |