Update OME-TIFF module and activities

NEUBIAS · Nov 12, 2024 · 00cc95c · 00cc95c
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Showing 6 changed files with 8 additions and 2 deletions.
diff --git a/_includes/ome_tiff/lif2ometiff.md → _includes/ome_tiff/convert_to_ometiff.md b/_includes/ome_tiff/lif2ometiff.md → _includes/ome_tiff/convert_to_ometiff.md
@@ -1,4 +1,4 @@
-<h4 id="lif2ometiff"><a href="#lif2ometiff">Convert LIF to OME-TIFF</a></h4>
+<h4 id="convert"><a href="#convert">Convert an image file to OME-TIFF</a></h4>
 
 - Download the Leica image file [image.lif](https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_xyc__two_images.lif)
 - Open the file

diff --git a/...e_tiff/lif2ometiff_fiji_ngff-converter.md → ...tiff/convert_to_ometiff_ngff-converter.md b/...e_tiff/lif2ometiff_fiji_ngff-converter.md → ...tiff/convert_to_ometiff_ngff-converter.md
diff --git a/_includes/ome_tiff/inspect_metadata.md → _includes/ome_tiff/open_ometiff.md b/_includes/ome_tiff/inspect_metadata.md → _includes/ome_tiff/open_ometiff.md
@@ -1,4 +1,4 @@
-<h4 id="inspect_metadata"><a href="#inspect_metadata">Inspect OME-TIFF metadata</a></h4>
+<h4 id="open"><a href="#open">Inspect OME-TIFF metadata</a></h4>
 
 - Download the OME-TIFF image file [xy_xyc__two_images.ome.tiff](https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_xyc__two_images.ome.tiff)
 - Open the OME-XML metadata of this file and try to understand it

diff --git a/..._tiff/inspect_metadata_fiji_bioformats.md → .../ome_tiff/open_ometiff_fiji_bioformats.md b/..._tiff/inspect_metadata_fiji_bioformats.md → .../ome_tiff/open_ometiff_fiji_bioformats.md
diff --git a/_includes/ome_tiff/save_ometiff.md b/_includes/ome_tiff/save_ometiff.md
@@ -0,0 +1,6 @@
+<h4 id="save"><a href="#save">Save... OME-TIFF metadata</a></h4>
+
+- Download the OME-TIFF image file [xy_xyc__two_images.ome.tiff](https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_xyc__two_images.ome.tiff)
+- Open the OME-XML metadata of this file and try to understand it
+- Interesting entries entail:
+    - `PixelPhysicalSize`
diff --git a/courses/2024_manual_image_measurements.md → courses/2025_02_manual_measurements.md b/courses/2024_manual_image_measurements.md → courses/2025_02_manual_measurements.md