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datatypes: simplifying image loading calls
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jhennies committed Apr 29, 2024
1 parent 17f7dc4 commit e18a8cd
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions _includes/datatypes/datatypes_act1_skimage_napari.py
Original file line number Diff line number Diff line change
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# %%
# Open the image
# Execute one of the cells
#image, _, _, _ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_8bit__nuclei_noisy_different_intensity.tif')
#image, _, _, _ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_8bit__nuclei_intensity_clipping_issue_a.tif')
#image, _, _, _ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_8bit__nuclei_intensity_clipping_issue_b.tif')
#image, _, _, _ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_8bit_binary__h2b.tif')
#image, _, _, _ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_16bit__autophagosomes.tif')
image, _, _, _ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_16bit__scanR_datatype_issue.tif')
#image, *_ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_8bit__nuclei_noisy_different_intensity.tif')
#image, *_ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_8bit__nuclei_intensity_clipping_issue_a.tif')
#image, *_ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_8bit__nuclei_intensity_clipping_issue_b.tif')
#image, *_ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_8bit_binary__h2b.tif')
#image, *_ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_16bit__autophagosomes.tif')
image, *_ = open_ij_tiff('https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_16bit__scanR_datatype_issue.tif')

# View the image
viewer.add_image(image)
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