feat: add helm-chart for nmr-predict

charts/rdkit-catridge-postgres/Chart.yaml → charts/nmr-predict/Chart.yaml

@@ -1,7 +1,9 @@
 apiVersion: v2
-name: rdkit-catridge-postgres
-description: Deprecated
-deprecated: true
+name: nmr-predict
+description: A Helm chart for nmr-predict service.
+maintainers:
+  - name: Nisha Sharma
+    email: nisha.sharma@uni-jena.de
 
 # A chart can be either an 'application' or a 'library' chart.
 #
@@ -16,7 +18,7 @@ type: application
 # This is the chart version. This version number should be incremented each time you make changes
 # to the chart and its templates, including the app version.
 # Versions are expected to follow Semantic Versioning (https://semver.org/)
-version: 0.1.2
+version: 0.1.0
 
 # This is the version number of the application being deployed. This version number should be
 # incremented each time you make changes to the application. Versions are not expected to

charts/rdkit-catridge-postgres/templates/NOTES.txt → charts/nmr-predict/templates/NOTES.txt

@@ -6,16 +6,16 @@
   {{- end }}
 {{- end }}
 {{- else if contains "NodePort" .Values.service.type }}
-  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ include "rdkit-catridge-postgres.fullname" . }})
+  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ include "nmr-predict.fullname" . }})
   export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
   echo http://$NODE_IP:$NODE_PORT
 {{- else if contains "LoadBalancer" .Values.service.type }}
      NOTE: It may take a few minutes for the LoadBalancer IP to be available.
-           You can watch the status of by running 'kubectl get --namespace {{ .Release.Namespace }} svc -w {{ include "rdkit-catridge-postgres.fullname" . }}'
-  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ include "rdkit-catridge-postgres.fullname" . }} --template "{{"{{ range (index .status.loadBalancer.ingress 0) }}{{.}}{{ end }}"}}")
+           You can watch the status of by running 'kubectl get --namespace {{ .Release.Namespace }} svc -w {{ include "nmr-predict.fullname" . }}'
+  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ include "nmr-predict.fullname" . }} --template "{{"{{ range (index .status.loadBalancer.ingress 0) }}{{.}}{{ end }}"}}")
   echo http://$SERVICE_IP:{{ .Values.service.port }}
 {{- else if contains "ClusterIP" .Values.service.type }}
-  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app.kubernetes.io/name={{ include "rdkit-catridge-postgres.name" . }},app.kubernetes.io/instance={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
+  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app.kubernetes.io/name={{ include "nmr-predict.name" . }},app.kubernetes.io/instance={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
   export CONTAINER_PORT=$(kubectl get pod --namespace {{ .Release.Namespace }} $POD_NAME -o jsonpath="{.spec.containers[0].ports[0].containerPort}")
   echo "Visit http://127.0.0.1:8080 to use your application"
   kubectl --namespace {{ .Release.Namespace }} port-forward $POD_NAME 8080:$CONTAINER_PORT

charts/rdkit-catridge-postgres/templates/_helpers.tpl → charts/nmr-predict/templates/_helpers.tpl

@@ -1,7 +1,7 @@
 {{/*
 Expand the name of the chart.
 */}}
-{{- define "rdkit-catridge-postgres.name" -}}
+{{- define "nmr-predict.name" -}}
 {{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" }}
 {{- end }}
 
@@ -10,7 +10,7 @@ Create a default fully qualified app name.
 We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
 If release name contains chart name it will be used as a full name.
 */}}
-{{- define "rdkit-catridge-postgres.fullname" -}}
+{{- define "nmr-predict.fullname" -}}
 {{- if .Values.fullnameOverride }}
 {{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" }}
 {{- else }}
@@ -26,16 +26,16 @@ If release name contains chart name it will be used as a full name.
 {{/*
 Create chart name and version as used by the chart label.
 */}}
-{{- define "rdkit-catridge-postgres.chart" -}}
+{{- define "nmr-predict.chart" -}}
 {{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" }}
 {{- end }}
 
 {{/*
 Common labels
 */}}
-{{- define "rdkit-catridge-postgres.labels" -}}
-helm.sh/chart: {{ include "rdkit-catridge-postgres.chart" . }}
-{{ include "rdkit-catridge-postgres.selectorLabels" . }}
+{{- define "nmr-predict.labels" -}}
+helm.sh/chart: {{ include "nmr-predict.chart" . }}
+{{ include "nmr-predict.selectorLabels" . }}
 {{- if .Chart.AppVersion }}
 app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
 {{- end }}
@@ -45,17 +45,17 @@ app.kubernetes.io/managed-by: {{ .Release.Service }}
 {{/*
 Selector labels
 */}}
-{{- define "rdkit-catridge-postgres.selectorLabels" -}}
-app.kubernetes.io/name: {{ include "rdkit-catridge-postgres.name" . }}
+{{- define "nmr-predict.selectorLabels" -}}
+app.kubernetes.io/name: {{ include "nmr-predict.name" . }}
 app.kubernetes.io/instance: {{ .Release.Name }}
 {{- end }}
 
 {{/*
 Create the name of the service account to use
 */}}
-{{- define "rdkit-catridge-postgres.serviceAccountName" -}}
+{{- define "nmr-predict.serviceAccountName" -}}
 {{- if .Values.serviceAccount.create }}
-{{- default (include "rdkit-catridge-postgres.fullname" .) .Values.serviceAccount.name }}
+{{- default (include "nmr-predict.fullname" .) .Values.serviceAccount.name }}
 {{- else }}
 {{- default "default" .Values.serviceAccount.name }}
 {{- end }}

charts/rdkit-catridge-postgres/templates/deployment.yaml → charts/nmr-predict/templates/deployment.yaml

@@ -1,34 +1,34 @@
 apiVersion: apps/v1
 kind: Deployment
 metadata:
-  name: {{ include "rdkit-catridge-postgres.fullname" . }}
+  name: {{ include "nmr-predict.fullname" . }}
   labels:
-    {{- include "rdkit-catridge-postgres.labels" . | nindent 4 }}
+    {{- include "nmr-predict.labels" . | nindent 4 }}
 spec:
   {{- if not .Values.autoscaling.enabled }}
   replicas: {{ .Values.replicaCount }}
   {{- end }}
   selector:
     matchLabels:
-      {{- include "rdkit-catridge-postgres.selectorLabels" . | nindent 6 }}
+      {{- include "nmr-predict.selectorLabels" . | nindent 6 }}
   template:
     metadata:
       {{- with .Values.podAnnotations }}
       annotations:
         {{- toYaml . | nindent 8 }}
       {{- end }}
       labels:
-        {{- include "rdkit-catridge-postgres.selectorLabels" . | nindent 8 }}
+        {{- include "nmr-predict.selectorLabels" . | nindent 8 }}
     spec:
       {{- with .Values.imagePullSecrets }}
       imagePullSecrets:
         {{- toYaml . | nindent 8 }}
       {{- end }}
-      serviceAccountName: {{ include "rdkit-catridge-postgres.serviceAccountName" . }}
+      serviceAccountName: {{ include "nmr-predict.serviceAccountName" . }}
       securityContext:
         {{- toYaml .Values.podSecurityContext | nindent 8 }}
       containers:
-        - name: {{ .Chart.Name }}
+        - name: {{ .Values.image.name }}
           securityContext:
             {{- toYaml .Values.securityContext | nindent 12 }}
           image: "{{ .Values.image.repository }}:{{ .Values.image.tag | default .Chart.AppVersion }}"

charts/rdkit-catridge-postgres/templates/hpa.yaml → charts/nmr-predict/templates/hpa.yaml

@@ -2,14 +2,14 @@
 apiVersion: autoscaling/v2beta1
 kind: HorizontalPodAutoscaler
 metadata:
-  name: {{ include "rdkit-catridge-postgres.fullname" . }}
+  name: {{ include "nmr-predict.fullname" . }}
   labels:
-    {{- include "rdkit-catridge-postgres.labels" . | nindent 4 }}
+    {{- include "nmr-predict.labels" . | nindent 4 }}
 spec:
   scaleTargetRef:
     apiVersion: apps/v1
     kind: Deployment
-    name: {{ include "rdkit-catridge-postgres.fullname" . }}
+    name: {{ include "nmr-predict.fullname" . }}
   minReplicas: {{ .Values.autoscaling.minReplicas }}
   maxReplicas: {{ .Values.autoscaling.maxReplicas }}
   metrics:

charts/rdkit-catridge-postgres/templates/ingress.yaml → charts/nmr-predict/templates/ingress.yaml

@@ -1,5 +1,5 @@
 {{- if .Values.ingress.enabled -}}
-{{- $fullName := include "rdkit-catridge-postgres.fullname" . -}}
+{{- $fullName := include "nmr-predict.fullname" . -}}
 {{- $svcPort := .Values.service.port -}}
 {{- if and .Values.ingress.className (not (semverCompare ">=1.18-0" .Capabilities.KubeVersion.GitVersion)) }}
   {{- if not (hasKey .Values.ingress.annotations "kubernetes.io/ingress.class") }}
@@ -17,7 +17,7 @@ kind: Ingress
 metadata:
   name: {{ $fullName }}
   labels:
-    {{- include "rdkit-catridge-postgres.labels" . | nindent 4 }}
+    {{- include "nmr-predict.labels" . | nindent 4 }}
   {{- with .Values.ingress.annotations }}
   annotations:
     {{- toYaml . | nindent 4 }}

charts/nmr-predict/templates/service.yaml

@@ -0,0 +1,15 @@
+apiVersion: v1
+kind: Service
+metadata:
+  name: {{ include "nmr-predict.fullname" . }}
+  labels:
+    {{- include "nmr-predict.labels" . | nindent 4 }}
+spec:
+  type: {{ .Values.service.type }}
+  ports:
+    - port: {{ .Values.service.port }}
+      targetPort: {{ .Values.service.port }}
+      protocol: TCP
+      name: http
+  selector:
+    {{- include "nmr-predict.selectorLabels" . | nindent 4 }}

charts/rdkit-catridge-postgres/templates/serviceaccount.yaml → charts/nmr-predict/templates/serviceaccount.yaml

@@ -2,9 +2,9 @@
 apiVersion: v1
 kind: ServiceAccount
 metadata:
-  name: {{ include "rdkit-catridge-postgres.serviceAccountName" . }}
+  name: {{ include "nmr-predict.serviceAccountName" . }}
   labels:
-    {{- include "rdkit-catridge-postgres.labels" . | nindent 4 }}
+    {{- include "nmr-predict.labels" . | nindent 4 }}
   {{- with .Values.serviceAccount.annotations }}
   annotations:
     {{- toYaml . | nindent 4 }}

charts/nmr-predict/templates/tests/test-connection.yaml

@@ -0,0 +1,15 @@
+apiVersion: v1
+kind: Pod
+metadata:
+  name: "{{ include "nmr-predict.fullname" . }}-test-connection"
+  labels:
+    {{- include "nmr-predict.labels" . | nindent 4 }}
+  annotations:
+    "helm.sh/hook": test
+spec:
+  containers:
+    - name: wget
+      image: busybox
+      command: ['wget']
+      args: ['{{ include "nmr-predict.fullname" . }}:{{ .Values.service.port }}']
+  restartPolicy: Never

charts/rdkit-catridge-postgres/values.yaml → charts/nmr-predict/values.yaml

@@ -1,14 +1,15 @@
-# Default values for rdkit-catridge-postgres.
+# Default values for nmr-predict.
 # This is a YAML-formatted file.
 # Declare variables to be passed into your templates.
 
 replicaCount: 1
 
 image:
-  repository: nginx
-  pullPolicy: IfNotPresent
+  repository: nmr-predict
+  repository: europe-west3-docker.pkg.dev/nmrxiv/nmrxiv-dev/nmr-predict-dev
+  pullPolicy: Always
   # Overrides the image tag whose default is the chart appVersion.
-  tag: ""
+  tag: latest
 
 imagePullSecrets: []
 nameOverride: ""