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updated the way of cloning
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hadiparsianNIH authored Oct 14, 2024
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Expand Up @@ -56,9 +56,9 @@ Included is a tutorial in the form of Jupyter notebooks. The main purpose of the

## **Getting Started**

**1)** Follow the steps highlighted [here](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateAWSSagemakerNotebooks.md) to create a new notebook instance in Amazon SageMaker. Follow steps and be especially careful to enable idle shutdown as highlighted. For this module, in [step 4](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateAWSSagemakerNotebooks.md#:~:text=Give%20a%20name%20to%20your%20notebook.%20Choose%20a%20notebook%20instance%20type%20based%20on%20needs%2C%20Amazon%20Linux%202%20as%20platform%20identifier%2C%20volume.%20Optional%2C%20create%20idle%2Dshut%20by%20selecting%20create%20new%20lifecycle%20configuration%20and%20copy%20and%20paste%20idle%2Dshutdown.sh%20and%20create%20configuration.%20Then%20click%20Create%20notebook%20instance%3A) in the "Notebook instance type" tab, select ml.m5.xlarge from the dropdown box. Select conda_python3 kernel in [step 8](https://github.com/NIGMS/NIGMS-Sandbox/blob/AWS%26GCP/docs/HowToCreateAWSSagemakerNotebooks.md#:~:text=Select%20a%20notebook%20and%20then%20kernel%3A).
**1)** Follow the steps highlighted [here](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateAWSSagemakerNotebooks.md) to create a new notebook instance in Amazon SageMaker. Follow steps and be especially careful to enable idle shutdown as highlighted. For this module, in [step 4](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateAWSSagemakerNotebooks.md) in the "Notebook instance type" tab, select ml.m5.xlarge from the dropdown box. Select conda_python3 kernel in [step 8](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateAWSSagemakerNotebooks.md).

**2)** Now you will need to download the tutorial files from GitHub. The easiest way to do this would be to clone the repository from NIGMS into your Amazon SageMaker notebook. To clone this repository, use the `Git` command `git clone https://github.com/NIGMS/Introduction-to-Data-Science-for-Biology.git` in the terminal as it illustrated in [step 9](https://github.com/NIGMS/NIGMS-Sandbox/blob/SageMakerTutorial/docs/HowToCreateAWSSagemakerNotebooks.md#:~:text=To%20clone%20in,see%20the%20repo). Please make sure you only enter the link for the repository that you want to clone. There are other bioinformatics related learning modules available in the [NIGMS Repository](https://github.com/NIGMS). This will download our tutorial files into a folder called `Introduction-to-Data-Science-for-Biology`.
**2)** Now you will need to download the tutorial files from GitHub. The easiest way to do this would be to clone the repository from NIGMS into your Amazon SageMaker notebook. To clone this repository, use the Git symbole on left menu and then insert the link `git clone https://github.com/NIGMS/Introduction-to-Data-Science-for-Biology.git` as it illustrated in [step 7](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateAWSSagemakerNotebooks.md). Please make sure you only enter the link for the repository that you want to clone. There are other bioinformatics related learning modules available in the [NIGMS Repository](https://github.com/NIGMS). This will download our tutorial files into a folder called `Introduction-to-Data-Science-for-Biology`.

**IMPORTANT NOTE**

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