Build standalone UPP via cmake (#257)

* 1)add capcity of building standalone UPP via cmake; 2)unify UPP executable as upp.x. * Remove theia config. in compile_upp.sh. * Update compile_upp.sh based on comments from Rahul. * Update detect_machine.sh. * Update VERSION to 10.0.3
NOAA-EMC · Jan 19, 2021 · b267dd9 · b267dd9
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diff --git a/VERSION b/VERSION
@@ -1 +1 @@
-10.0.2
+10.0.3
diff --git a/modulefiles/hera b/modulefiles/hera
@@ -0,0 +1,36 @@
+#%Module######################################################################
+# Wen Meng 01/2021, Set up config. with the hpc-stack NCEPLIBS. 
+##############################################################################
+
+proc ModulesHelp { } {
+puts stderr "Loads modules required for building upp"
+}
+module-whatis "Loads UPP prerequisites on Hera"
+
+module load cmake/3.16.1
+
+module use /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/modulefiles/stack
+module load hpc/1.1.0
+module load hpc-intel/18.0.5.274
+module load hpc-impi/2018.0.4
+
+module load jasper/2.0.22
+module load zlib/1.2.11
+module load png/1.6.35
+
+module load hdf5/1.10.6
+module load netcdf/4.7.4
+
+module load bacio/2.4.1
+module load crtm/2.3.0
+module load g2/3.4.1
+module load g2tmpl/1.9.1
+module load gfsio/1.4.1 
+module load ip/3.3.3
+module load nemsio/2.5.2
+module load sfcio/1.4.1
+module load sigio/2.3.2
+module load sp/2.3.3
+module load w3nco/2.4.1
+module load w3emc/2.7.3
+module load wrf_io/1.1.1
diff --git a/modulefiles/jet b/modulefiles/jet
@@ -0,0 +1,36 @@
+#%Module######################################################################
+# Wen Meng 01/2021, Set up config. with the hpc-stack NCEPLIBS. 
+##############################################################################
+
+proc ModulesHelp { } {
+puts stderr "Loads modules required for building upp"
+}
+module-whatis "Loads UPP prerequisites on Jet"
+
+module load cmake/3.16.1
+
+module use /lfs4/HFIP/hfv3gfs/nwprod/hpc-stack/libs/modulefiles/stack
+module load hpc/1.1.0
+module load hpc-intel/18.0.5.274
+module load hpc-impi/2018.4.274
+
+module load jasper/2.0.22
+module load zlib/1.2.11
+module load png/1.6.35
+
+module load hdf5/1.10.6
+module load netcdf/4.7.4
+
+module load bacio/2.4.1
+module load crtm/2.3.0
+module load g2/3.4.1
+module load g2tmpl/1.9.1
+module load gfsio/1.4.1 
+module load ip/3.3.3
+module load nemsio/2.5.2
+module load sfcio/1.4.1
+module load sigio/2.3.2
+module load sp/2.3.3
+module load w3nco/2.4.1
+module load w3emc/2.7.3
+module load wrf_io/1.1.1
diff --git a/modulefiles/orion b/modulefiles/orion
@@ -0,0 +1,36 @@
+#%Module######################################################################
+# Wen Meng 01/2021, Set up config. with the hpc-stack NCEPLIBS. 
+##############################################################################
+
+proc ModulesHelp { } {
+puts stderr "Loads modules required for building upp"
+}
+module-whatis "Loads UPP prerequisites on Orion"
+
+module load cmake/3.17.3
+
+module use /apps/contrib/NCEP/libs/hpc-stack/modulefiles/stack
+module load hpc/1.1.0
+module load hpc-intel/2018.4
+module load hpc-impi/2018.4
+
+module load jasper/2.0.22
+module load zlib/1.2.11
+module load png/1.6.35
+
+module load hdf5/1.10.6
+module load netcdf/4.7.4
+
+module load bacio/2.4.1
+module load crtm/2.3.0
+module load g2/3.4.1
+module load g2tmpl/1.9.1
+module load gfsio/1.4.1 
+module load ip/3.3.3
+module load nemsio/2.5.2
+module load sfcio/1.4.1
+module load sigio/2.3.2
+module load sp/2.3.3
+module load w3nco/2.4.1
+module load w3emc/2.7.3
+module load wrf_io/1.1.1
diff --git a/modulefiles/wcoss_cray b/modulefiles/wcoss_cray
@@ -0,0 +1,42 @@
+#%Module######################################################################
+# Wen Meng 01/2021, Set up config. with the hpc-stack NCEPLIBS. 
+##############################################################################
+
+proc ModulesHelp { } {
+puts stderr "Loads modules required for building upp"
+}
+module-whatis "Loads UPP prerequisites on WCOSS Luna and Surge"
+
+module load cmake/3.16.2
+
+module use /usrx/local/nceplibs/NCEPLIBS/cmake/install/NCEPLIBS-v1.3.0/modules
+module load PrgEnv-intel
+module rm intel
+module load intel/18.1.163
+module rm NetCDF-intel-sandybridge/4.2
+module load xt-lsfhpc/9.1.3
+module load craype-haswell
+
+module use /usrx/local/dev/modulefiles
+module load HDF5-parallel-intel-sandybridge/1.10.6
+module load NetCDF-intel-sandybridge/4.7.4
+
+module load jasper-gnu-sandybridge/1.900.1
+module load zlib-intel-sandybridge/1.2.7
+module load png-intel-sandybridge/1.2.49
+setenv PNG_ROOT /usrx/local/prod//png/1.2.49/intel/sandybridge
+
+module use /usrx/local/nceplibs/NCEPLIBS/cmake/install/NCEPLIBS-v1.3.0/modules
+module load bacio/2.4.1
+module load crtm/2.3.0
+module load g2/3.4.1
+module load g2tmpl/1.9.1
+module load gfsio/1.4.1 
+module load ip/3.3.3
+module load nemsio/2.5.2
+module load sfcio/1.4.1
+module load sigio/2.3.2
+module load sp/2.3.3
+module load w3nco/2.4.1
+module load w3emc/2.7.3
+module load wrf_io/1.1.1
diff --git a/modulefiles/wcoss_dell_p3 b/modulefiles/wcoss_dell_p3
@@ -0,0 +1,36 @@
+#%Module######################################################################
+# Wen Meng 01/2021, Set up config. with the hpc-stack NCEPLIBS. 
+##############################################################################
+
+proc ModulesHelp { } {
+puts stderr "Loads modules required for building upp"
+}
+module-whatis "Loads UPP prerequisites on WCOSS Venus and Mars"
+
+module load cmake/3.16.2
+
+module use /usrx/local/nceplibs/dev/hpc-stack/libs/hpc-stack/modulefiles/stack
+module load hpc/1.1.0
+module load hpc-ips/18.0.1.163
+module load hpc-impi/18.0.1
+
+module load jasper/2.0.22
+module load zlib/1.2.11
+module load png/1.6.35
+
+module load hdf5/1.10.6
+module load netcdf/4.7.4
+
+module load bacio/2.4.1
+module load crtm/2.3.0
+module load g2/3.4.1
+module load g2tmpl/1.9.1
+module load gfsio/1.4.1 
+module load ip/3.3.3
+module load nemsio/2.5.2
+module load sfcio/1.4.1
+module load sigio/2.3.2
+module load sp/2.3.3
+module load w3nco/2.4.1
+module load w3emc/2.7.3
+module load wrf_io/1.1.1
diff --git a/sorc/ncep_post.fd/CMakeLists.txt b/sorc/ncep_post.fd/CMakeLists.txt
@@ -185,7 +185,7 @@ elseif(CMAKE_Fortran_COMPILER_ID MATCHES "^(GNU|Clang|AppleClang)$")
 endif()
 
 set(LIBNAME "upp")
-set(EXENAME "ncep_post")
+set(EXENAME "upp.x")
 
 set(module_dir "${CMAKE_CURRENT_BINARY_DIR}/include")
 

diff --git a/tests/compile_upp.sh b/tests/compile_upp.sh
@@ -0,0 +1,32 @@
+#!/bin/bash
+# Wen Meng 01/2020, Set up for cmake build.
+#############################################
+
+set -x
+
+#Clean loaded modules
+module purge
+
+hostname
+source detect_machine.sh
+if [[ $(uname -s) == Darwin ]]; then
+  readonly MYDIR=$(cd "$(dirname "$(greadlink -f -n "${BASH_SOURCE[0]}" )" )" && pwd -P)
+else
+  readonly MYDIR=$(cd "$(dirname "$(readlink -f -n "${BASH_SOURCE[0]}" )" )" && pwd -P)
+fi
+PATHTR=${PATHTR:-$( cd ${MYDIR}/.. && pwd )}
+
+#Load required modulefiles
+module use $PATHTR/modulefiles
+modulefile=${MACHINE_ID}
+module load $modulefile
+module list
+
+rm -rf build install
+mkdir build && cd build
+cmake -DCMAKE_INSTALL_PREFIX=../install -DBUILD_WITH_WRFIO=ON ../..
+make -j6 
+make install
+
+rm -rf $PATHTR/exec && mkdir $PATHTR/exec
+cp $PATHTR/tests/install/bin/upp.x $PATHTR/exec/.
diff --git a/tests/detect_machine.sh b/tests/detect_machine.sh
@@ -0,0 +1,103 @@
+#!/bin/bash
+
+case $(hostname -f) in
+
+  llogin1)                 MACHINE_ID=wcoss_cray ;; ### luna
+  llogin2)                 MACHINE_ID=wcoss_cray ;; ### luna
+  llogin3)                 MACHINE_ID=wcoss_cray ;; ### luna
+
+  slogin1)                 MACHINE_ID=wcoss_cray ;; ### surge
+  slogin2)                 MACHINE_ID=wcoss_cray ;; ### surge
+  slogin3)                 MACHINE_ID=wcoss_cray ;; ### surge
+
+  v71a1.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### venus
+  v71a2.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### venus
+  v71a3.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### venus
+  v72a1.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### venus
+  v72a2.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### venus
+  v72a3.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### venus
+
+  m71a1.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### mars
+  m71a2.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### mars
+  m71a3.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### mars
+  m72a1.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### mars
+  m72a2.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### mars
+  m72a3.ncep.noaa.gov)     MACHINE_ID=wcoss_dell_p3 ;; ### mars
+
+  alogin01)                MACHINE_ID=wcoss2 ;; ### acorn
+  alogin02)                MACHINE_ID=wcoss2 ;; ### acorn
+
+  gaea9)                   MACHINE_ID=gaea ;; ### gaea9
+  gaea10)                  MACHINE_ID=gaea ;; ### gaea10
+  gaea11)                  MACHINE_ID=gaea ;; ### gaea11
+  gaea12)                  MACHINE_ID=gaea ;; ### gaea12
+  gaea13)                  MACHINE_ID=gaea ;; ### gaea13
+  gaea14)                  MACHINE_ID=gaea ;; ### gaea14
+  gaea15)                  MACHINE_ID=gaea ;; ### gaea15
+  gaea16)                  MACHINE_ID=gaea ;; ### gaea16
+  gaea9.ncrc.gov)          MACHINE_ID=gaea ;; ### gaea9
+  gaea10.ncrc.gov)         MACHINE_ID=gaea ;; ### gaea10
+  gaea11.ncrc.gov)         MACHINE_ID=gaea ;; ### gaea11
+  gaea12.ncrc.gov)         MACHINE_ID=gaea ;; ### gaea12
+  gaea13.ncrc.gov)         MACHINE_ID=gaea ;; ### gaea13
+  gaea14.ncrc.gov)         MACHINE_ID=gaea ;; ### gaea14
+  gaea15.ncrc.gov)         MACHINE_ID=gaea ;; ### gaea15
+  gaea16.ncrc.gov)         MACHINE_ID=gaea ;; ### gaea16
+
+  hfe01)                   MACHINE_ID=hera ;; ### hera01
+  hfe02)                   MACHINE_ID=hera ;; ### hera02
+  hfe03)                   MACHINE_ID=hera ;; ### hera03
+  hfe04)                   MACHINE_ID=hera ;; ### hera04
+  hfe05)                   MACHINE_ID=hera ;; ### hera05
+  hfe06)                   MACHINE_ID=hera ;; ### hera06
+  hfe07)                   MACHINE_ID=hera ;; ### hera07
+  hfe08)                   MACHINE_ID=hera ;; ### hera08
+  hfe09)                   MACHINE_ID=hera ;; ### hera09
+  hfe10)                   MACHINE_ID=hera ;; ### hera10
+  hfe11)                   MACHINE_ID=hera ;; ### hera11
+  hfe12)                   MACHINE_ID=hera ;; ### hera12
+
+  fe1)                     MACHINE_ID=jet ;; ### jet01
+  fe2)                     MACHINE_ID=jet ;; ### jet02
+  fe3)                     MACHINE_ID=jet ;; ### jet03
+  fe4)                     MACHINE_ID=jet ;; ### jet04
+  fe5)                     MACHINE_ID=jet ;; ### jet05
+  fe6)                     MACHINE_ID=jet ;; ### jet06
+  fe7)                     MACHINE_ID=jet ;; ### jet07
+  fe8)                     MACHINE_ID=jet ;; ### jet08
+  tfe1)                    MACHINE_ID=jet ;; ### jet09
+  tfe2)                    MACHINE_ID=jet ;; ### jet10
+
+  Orion-login-1.HPC.MsState.Edu) MACHINE_ID=orion ;; ### orion1
+  Orion-login-2.HPC.MsState.Edu) MACHINE_ID=orion ;; ### orion2
+  Orion-login-3.HPC.MsState.Edu) MACHINE_ID=orion ;; ### orion3
+  Orion-login-4.HPC.MsState.Edu) MACHINE_ID=orion ;; ### orion4
+
+  cheyenne1.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne1
+  cheyenne2.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne2
+  cheyenne3.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne3
+  cheyenne4.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne4
+  cheyenne5.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne5
+  cheyenne6.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne6
+  cheyenne1.ib0.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne1
+  cheyenne2.ib0.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne2
+  cheyenne3.ib0.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne3
+  cheyenne4.ib0.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne4
+  cheyenne5.ib0.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne5
+  cheyenne6.ib0.cheyenne.ucar.edu) MACHINE_ID=cheyenne ;; ### cheyenne6
+
+  login1.stampede2.tacc.utexas.edu) MACHINE_ID=stampede ;; ### stampede1
+  login2.stampede2.tacc.utexas.edu) MACHINE_ID=stampede ;; ### stampede2
+  login3.stampede2.tacc.utexas.edu) MACHINE_ID=stampede ;; ### stampede3
+  login4.stampede2.tacc.utexas.edu) MACHINE_ID=stampede ;; ### stampede4
+esac
+
+# Overwrite auto-detect with RT_MACHINE if set
+MACHINE_ID=${RT_MACHINE:-${MACHINE_ID}}
+
+# Append compiler
+#if [ $MACHINE_ID = orion ] || [ $MACHINE_ID = hera ] || [ $MACHINE_ID = cheyenne ] || [ $MACHINE_ID = jet ] || [ $MACHINE_ID = gaea ] || [ $MACHINE_ID = stampede ] ; then
+#    MACHINE_ID=${MACHINE_ID}.${RT_COMPILER}
+#fi
+
+echo "Machine: " $MACHINE_ID