Seventh reconciliation PR from production/RRFS.v1

.gitmodules

@@ -8,8 +8,10 @@
   branch = main
 [submodule "ccpp/physics"]
   path = ccpp/physics
-  url = https://github.com/ufs-community/ccpp-physics
-  branch = ufs/dev
+  #url = https://github.com/ufs-community/ccpp-physics
+  #branch = ufs/dev
+  url = https://github.com/grantfirl/ccpp-physics
+  branch = rrfsv1-to-ufs/dev7
 [submodule "upp"]
   path = upp
   url = https://github.com/NOAA-EMC/UPP

atmos_model.F90

@@ -49,7 +49,7 @@ module atmos_model_mod
 use mpp_mod,            only: mpp_get_current_pelist_name
 use mpp_mod,            only: input_nml_file
 use fms2_io_mod,        only: file_exists
-use fms_mod,            only: close_file, write_version_number, stdlog, stdout
+use fms_mod,            only: write_version_number, stdlog, stdout
 use fms_mod,            only: clock_flag_default
 use fms_mod,            only: check_nml_error
 use diag_manager_mod,   only: diag_send_complete_instant
@@ -831,7 +831,7 @@ subroutine atmos_model_init (Atmos, Time_init, Time, Time_step)
    if (mpp_pe() == mpp_root_pe()) then
       unit = stdlog( )
       write (unit, nml=atmos_model_nml)
-      call close_file (unit)
+      close (unit)
    endif
 
    !--- set up clock time