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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

Pstjohn/update base image 2410
#551 opened Dec 19, 2024 by pstjohn Loading…
4
Update the Dockerfile with necessary changes from NeMo for H100 self attention accuracy.
#550 opened Dec 19, 2024 by jstjohn Loading…
3
ESM2 Finetuning refactor
#546 opened Dec 18, 2024 by farhadrgh • Draft
5 tasks
Attempts to bump the base image to pytorch:24.07
#544 opened Dec 18, 2024 by pstjohn Loading…
3
Bump 3rdparty/NeMo from 06e6703 to 06a1491 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#538 opened Dec 17, 2024 by dependabot bot Loading…
7
Initial attempt for ESM-2 to NeMo checkpoint conversion
#537 opened Dec 16, 2024 by pstjohn • Draft
[DO NOT REVIEW AS A PR] little example of how we might use nemo-run for handling SLURM
#536 opened Dec 16, 2024 by skothenhill-nv Loading…
add spawn cuda process testing
#535 opened Dec 16, 2024 by sichu2023 • Draft
2
Bump 3rdparty/Megatron-LM from 99f23d2 to 71c394b dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#533 opened Dec 16, 2024 by dependabot bot Loading…
1
Implement megatron-aware perplexity in torchmetrics
#525 opened Dec 12, 2024 by sichu2023 Loading…
@sichu2023
15
Remove outdated note on very large datasets in MultiEpochDataset SKIP_CI
#521 opened Dec 11, 2024 by pstjohn Loading…
Update ddp config to improve ESM-2 15B MFU
#520 opened Dec 11, 2024 by sichu2023 Loading…
@sichu2023
11
Re-opens Conda-Based Compatibility Test Images
#518 opened Dec 9, 2024 by skothenhill-nv Loading…
@malcolmgreaves
2
wip - Mg/pytorch source builds
#506 opened Dec 6, 2024 by malcolmgreaves • Draft
5 tasks
[Draft] Unify inference interface - request for comments
#505 opened Dec 6, 2024 by skothenhill-nv Loading…
7
single Numpy array option
#503 opened Dec 5, 2024 by polinabinder1 • Draft
7
Set up our pytest suite for the codecov integration
#502 opened Dec 5, 2024 by pstjohn Loading…
10
Savitha/new profiling experiments
#500 opened Dec 4, 2024 by savitha-eng • Draft
5 tasks
1
pytest in CI: changing source of data download to ngc (bionemo2)
#498 opened Dec 4, 2024 by dorotat-nv Loading…
@dorotat-nv
1
add initial configs for perf testing on ESM2 in JET (bionemo2)
#497 opened Dec 4, 2024 by dorotat-nv Loading…
@dorotat-nv
22
Fully Integrate SCDL into Geneformer
#480 opened Nov 26, 2024 by savitha-eng Loading…
50
Refactor bucket batch sampler to support DDP sampling
#478 opened Nov 26, 2024 by guoqing-zhou • Draft
5 tasks
20
Polinabinder/file extend
#477 opened Nov 26, 2024 by polinabinder1 Loading…
26
Add a utility function for extending a file with the content of another file. SKIP_CI
#471 opened Nov 23, 2024 by edawson Loading…
debugging checkpoint resumption
#469 opened Nov 22, 2024 by pstjohn • Draft
ProTip! What’s not been updated in a month: updated:<2024-11-19.