Merge pull request #903 from aanil/py312

Support ont FCs in bioinfo tab
NationalGenomicsInfrastructure · Jan 7, 2025 · 7d140ad · 7d140ad
2 parents c3b1989 + aff9646
commit 7d140ad
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diff --git a/requirements.txt b/requirements.txt
@@ -4,7 +4,7 @@ cffi
 CouchDB==1.1
 ecdsa>=0.13
 genologics @ git+https://github.com/SciLifeLab/genologics.git
-genologics_sql @ git+https://github.com/SciLifeLab/genologics_sql.git
+genologics_sql @ git+https://github.com/NationalGenomicsInfrastructure/genologics_sql.git
 httplib2>=0.10.3
 ibmcloudant>=0.9.1
 markdown

diff --git a/run_dir/design/bioinfo_tab/run_lane_sample_view.html b/run_dir/design/bioinfo_tab/run_lane_sample_view.html
@@ -72,6 +72,8 @@
         {% set url_addition = "" %}
         {% if flowcell.get("instrument_type") == "element"%}
           {% set url_addition = "_element" %}
+        {% elif flowcell.get("instrument_type") == "ont"%}
+          {% set url_addition = "_ont" %}
         {% end %}
         <tr class="bioinfo-fc  {% if disabled %} bioinfo-status-disabled {% end %}"
             id="bioinfo-fc-{{ flowcell_id }}" data-parent="#bioinfo-project-{{ project_id }}">

diff --git a/run_dir/design/bioinfo_tab/sample_run_lane_view.html b/run_dir/design/bioinfo_tab/sample_run_lane_view.html
@@ -116,6 +116,8 @@
           {% set url_addition = "" %}
           {% if flowcell.get("instrument_type") == "element"%}
             {% set url_addition = "_element" %}
+          {% elif flowcell.get("instrument_type") == "ont"%}
+            {% set url_addition = "_ont" %}
           {% end %}
           <tr class="bioinfo-fc  {% if flowcell.get('flowcell_status') in ['Demultiplexing', 'Transferring', 'Sequencing', 'ERROR', 'Failed', 'Delivered'] %} bioinfo-status-disabled {% end %}"
               id="bioinfo-fc-{{ sample_id }}-{{ flowcell_id }}"