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Remove the output folder name to avoid confusion.
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fcyu authored Jul 15, 2024
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4 changes: 2 additions & 2 deletions docs/tutorial_offset.md
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Expand Up @@ -88,7 +88,7 @@ Please note: Only peptides with the mass shifts specified in the list will be in
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### Set the output location and run
8) On the Run tab, make a new folder for the output files (e.g. ‘offset_results’), then click ‘RUN’ and wait for the analysis to finish.
8) On the Run tab, make a new folder for the output files, then click ‘RUN’ and wait for the analysis to finish.

![](https://raw.githubusercontent.com/Nesvilab/FragPipe/gh-pages/images/share-run.png)

Expand All @@ -100,7 +100,7 @@ When the run is finished, ‘DONE’ will be printed at the end of the text in t
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### Examine the results
In the output location (‘offset_results’ folder), you will see subfolders containing individual results for DMSO and PTL, plus PTM-Shepherd output files that summarize the mass shifts from both experimental conditions together. A guide to all the output files can be found [here](https://fragpipe.nesvilab.org/docs/tutorial_fragpipe_outputs.html).
In the output location, you will see subfolders containing individual results for DMSO and PTL, plus PTM-Shepherd output files that summarize the mass shifts from both experimental conditions together. A guide to all the output files can be found [here](https://fragpipe.nesvilab.org/docs/tutorial_fragpipe_outputs.html).

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